Hb_003874_030

Information

Type -
Description -
Location Contig3874: 65494-65886
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP20182.1
description hypothetical protein JCGZ_00004 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00004 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38878: 65055-65911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003874_030 0.0 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
2 Hb_049573_010 0.0051140677 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005914_190 0.0071808236 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
4 Hb_178734_010 0.009110521 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
5 Hb_010261_070 0.0108552073 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
6 Hb_002783_290 0.0120891049 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
7 Hb_118730_050 0.0122193902 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
8 Hb_099538_020 0.0131486484 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
9 Hb_002289_160 0.0188917378 - - Polygalacturonase precursor, putative [Ricinus communis]
10 Hb_027136_030 0.019323695 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_149495_010 0.0198189895 - - putative starch phosphorylase, partial [Sorghum bicolor]
12 Hb_001922_140 0.0317457317 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000194_040 0.0326171991 - - carbonic anhydrase, putative [Ricinus communis]
14 Hb_054865_110 0.0330839545 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003424_040 0.0331809112 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
16 Hb_000628_090 0.0343443019 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
17 Hb_157950_010 0.0344727217 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
18 Hb_073680_010 0.0345853954 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_005081_050 0.0364348254 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
20 Hb_000389_120 0.0380202459 - - hypothetical protein JCGZ_20066 [Jatropha curcas]

Gene co-expression network

sample Hb_003874_030 Hb_003874_030 Hb_049573_010 Hb_049573_010 Hb_003874_030--Hb_049573_010 Hb_005914_190 Hb_005914_190 Hb_003874_030--Hb_005914_190 Hb_178734_010 Hb_178734_010 Hb_003874_030--Hb_178734_010 Hb_010261_070 Hb_010261_070 Hb_003874_030--Hb_010261_070 Hb_002783_290 Hb_002783_290 Hb_003874_030--Hb_002783_290 Hb_118730_050 Hb_118730_050 Hb_003874_030--Hb_118730_050 Hb_049573_010--Hb_178734_010 Hb_049573_010--Hb_002783_290 Hb_049573_010--Hb_118730_050 Hb_049573_010--Hb_005914_190 Hb_049573_010--Hb_010261_070 Hb_005914_190--Hb_010261_070 Hb_099538_020 Hb_099538_020 Hb_005914_190--Hb_099538_020 Hb_002289_160 Hb_002289_160 Hb_005914_190--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_005914_190--Hb_027136_030 Hb_178734_010--Hb_002783_290 Hb_178734_010--Hb_118730_050 Hb_178734_010--Hb_005914_190 Hb_178734_010--Hb_010261_070 Hb_010261_070--Hb_099538_020 Hb_010261_070--Hb_002289_160 Hb_010261_070--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_010261_070--Hb_149495_010 Hb_002783_290--Hb_118730_050 Hb_002783_290--Hb_005914_190 Hb_000194_040 Hb_000194_040 Hb_002783_290--Hb_000194_040 Hb_118730_050--Hb_005914_190 Hb_118730_050--Hb_000194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.142239 1.78738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis