Hb_049573_010

Information

Type -
Description -
Location Contig49573: 54-572
Sequence    

Annotation

kegg
ID rcu:RCOM_0304060
description hypothetical protein
nr
ID XP_002530559.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SX40
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0304060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45457: 235-431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049573_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_178734_010 0.0039968791 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
3 Hb_003874_030 0.0051140677 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
4 Hb_002783_290 0.0069760323 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
5 Hb_118730_050 0.0071063475 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
6 Hb_005914_190 0.0122939081 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_010261_070 0.0159673655 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
8 Hb_099538_020 0.0182600889 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
9 Hb_002289_160 0.0240009274 - - Polygalacturonase precursor, putative [Ricinus communis]
10 Hb_027136_030 0.0244326898 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_149495_010 0.0249277565 - - putative starch phosphorylase, partial [Sorghum bicolor]
12 Hb_000194_040 0.0275144051 - - carbonic anhydrase, putative [Ricinus communis]
13 Hb_054865_110 0.0279815327 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000628_090 0.029242918 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
15 Hb_111442_010 0.0347260392 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
16 Hb_002601_030 0.0350826893 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
17 Hb_000389_120 0.0354352301 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
18 Hb_001922_140 0.0368476784 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000422_100 0.037556834 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
20 Hb_003424_040 0.0382818716 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_049573_010 Hb_049573_010 Hb_178734_010 Hb_178734_010 Hb_049573_010--Hb_178734_010 Hb_003874_030 Hb_003874_030 Hb_049573_010--Hb_003874_030 Hb_002783_290 Hb_002783_290 Hb_049573_010--Hb_002783_290 Hb_118730_050 Hb_118730_050 Hb_049573_010--Hb_118730_050 Hb_005914_190 Hb_005914_190 Hb_049573_010--Hb_005914_190 Hb_010261_070 Hb_010261_070 Hb_049573_010--Hb_010261_070 Hb_178734_010--Hb_002783_290 Hb_178734_010--Hb_118730_050 Hb_178734_010--Hb_003874_030 Hb_178734_010--Hb_005914_190 Hb_178734_010--Hb_010261_070 Hb_003874_030--Hb_005914_190 Hb_003874_030--Hb_010261_070 Hb_003874_030--Hb_002783_290 Hb_003874_030--Hb_118730_050 Hb_002783_290--Hb_118730_050 Hb_002783_290--Hb_005914_190 Hb_000194_040 Hb_000194_040 Hb_002783_290--Hb_000194_040 Hb_118730_050--Hb_005914_190 Hb_118730_050--Hb_000194_040 Hb_005914_190--Hb_010261_070 Hb_099538_020 Hb_099538_020 Hb_005914_190--Hb_099538_020 Hb_002289_160 Hb_002289_160 Hb_005914_190--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_005914_190--Hb_027136_030 Hb_010261_070--Hb_099538_020 Hb_010261_070--Hb_002289_160 Hb_010261_070--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_010261_070--Hb_149495_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.149271 1.96512 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis