Hb_000628_090

Information

Type -
Description -
Location Contig628: 139688-140029
Sequence    

Annotation

kegg
ID rcu:RCOM_1590750
description calmodulin 4, putative
nr
ID KJB63398.1
description hypothetical protein B456_010G019400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SJV5
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G019400 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_090 0.0 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
2 Hb_054865_110 0.001264227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000194_040 0.001732336 - - carbonic anhydrase, putative [Ricinus communis]
4 Hb_111442_010 0.0054988048 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
5 Hb_000422_100 0.0083398836 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
6 Hb_001347_020 0.0096121557 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
7 Hb_130357_010 0.0202071264 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_118730_050 0.0221483877 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
9 Hb_002783_290 0.0222785495 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
10 Hb_003729_040 0.0244233295 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_178734_010 0.0252535421 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
12 Hb_002601_030 0.0287370509 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
13 Hb_049573_010 0.029242918 - - conserved hypothetical protein [Ricinus communis]
14 Hb_069237_010 0.030274348 - - -
15 Hb_000389_120 0.034248749 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
16 Hb_003874_030 0.0343443019 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
17 Hb_005914_190 0.041500806 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
18 Hb_000258_010 0.0425358941 - - lipid transfer precursor protein [Hevea brasiliensis]
19 Hb_010261_070 0.0451599585 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
20 Hb_099538_020 0.047442978 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]

Gene co-expression network

sample Hb_000628_090 Hb_000628_090 Hb_054865_110 Hb_054865_110 Hb_000628_090--Hb_054865_110 Hb_000194_040 Hb_000194_040 Hb_000628_090--Hb_000194_040 Hb_111442_010 Hb_111442_010 Hb_000628_090--Hb_111442_010 Hb_000422_100 Hb_000422_100 Hb_000628_090--Hb_000422_100 Hb_001347_020 Hb_001347_020 Hb_000628_090--Hb_001347_020 Hb_130357_010 Hb_130357_010 Hb_000628_090--Hb_130357_010 Hb_054865_110--Hb_000194_040 Hb_054865_110--Hb_111442_010 Hb_054865_110--Hb_000422_100 Hb_054865_110--Hb_001347_020 Hb_118730_050 Hb_118730_050 Hb_054865_110--Hb_118730_050 Hb_000194_040--Hb_111442_010 Hb_000194_040--Hb_000422_100 Hb_000194_040--Hb_001347_020 Hb_000194_040--Hb_118730_050 Hb_111442_010--Hb_000422_100 Hb_111442_010--Hb_001347_020 Hb_111442_010--Hb_130357_010 Hb_000422_100--Hb_001347_020 Hb_000422_100--Hb_130357_010 Hb_001347_020--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_130357_010--Hb_003729_040 Hb_069237_010 Hb_069237_010 Hb_130357_010--Hb_069237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.338461 5.93183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis