Hb_002235_340

Information

Type transcription factor
Description TF Family: MYB
Location Contig2235: 301206-302930
Sequence    

Annotation

kegg
ID rcu:RCOM_0340090
description r2r3-myb transcription factor, putative
nr
ID XP_002531848.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9T0S9
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0340090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23254: 301150-301741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_340 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_001817_050 0.0030095028 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
3 Hb_153199_010 0.013091994 - - -
4 Hb_000203_130 0.0156642719 - - -
5 Hb_000103_210 0.0210957058 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
6 Hb_007432_040 0.0242007676 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
7 Hb_004032_170 0.0249544201 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
8 Hb_001322_200 0.0260606819 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000530_080 0.0267761222 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
10 Hb_000733_170 0.0301144165 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_001591_020 0.035955027 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
12 Hb_001892_040 0.0410588067 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
13 Hb_005976_030 0.0537295956 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
14 Hb_003092_010 0.0567273354 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
15 Hb_000258_010 0.0586794981 - - lipid transfer precursor protein [Hevea brasiliensis]
16 Hb_000389_130 0.0637833527 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_118941_010 0.0660927432 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_060416_010 0.0683398356 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000645_040 0.0691263287 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
20 Hb_069237_010 0.0706914241 - - -

Gene co-expression network

sample Hb_002235_340 Hb_002235_340 Hb_001817_050 Hb_001817_050 Hb_002235_340--Hb_001817_050 Hb_153199_010 Hb_153199_010 Hb_002235_340--Hb_153199_010 Hb_000203_130 Hb_000203_130 Hb_002235_340--Hb_000203_130 Hb_000103_210 Hb_000103_210 Hb_002235_340--Hb_000103_210 Hb_007432_040 Hb_007432_040 Hb_002235_340--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_002235_340--Hb_004032_170 Hb_001817_050--Hb_000203_130 Hb_001817_050--Hb_153199_010 Hb_001817_050--Hb_000103_210 Hb_001322_200 Hb_001322_200 Hb_001817_050--Hb_001322_200 Hb_001817_050--Hb_007432_040 Hb_153199_010--Hb_007432_040 Hb_153199_010--Hb_004032_170 Hb_000530_080 Hb_000530_080 Hb_153199_010--Hb_000530_080 Hb_000733_170 Hb_000733_170 Hb_153199_010--Hb_000733_170 Hb_000203_130--Hb_000103_210 Hb_000203_130--Hb_001322_200 Hb_000203_130--Hb_153199_010 Hb_000203_130--Hb_007432_040 Hb_000103_210--Hb_001322_200 Hb_000103_210--Hb_153199_010 Hb_003092_010 Hb_003092_010 Hb_000103_210--Hb_003092_010 Hb_007432_040--Hb_004032_170 Hb_007432_040--Hb_000530_080 Hb_007432_040--Hb_000733_170 Hb_001591_020 Hb_001591_020 Hb_007432_040--Hb_001591_020 Hb_001892_040 Hb_001892_040 Hb_007432_040--Hb_001892_040 Hb_004032_170--Hb_000530_080 Hb_004032_170--Hb_000733_170 Hb_004032_170--Hb_001591_020 Hb_004032_170--Hb_001892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0447402 3.37885 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis