Hb_000103_210

Information

Type -
Description -
Location Contig103: 177123-177671
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09260g
description POPTRDRAFT_769268; hypothetical protein
nr
ID XP_011030634.1
description PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FYH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s09260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_210 0.0 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
2 Hb_001322_200 0.0050163346 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000203_130 0.005462371 - - -
4 Hb_001817_050 0.0181040635 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
5 Hb_002235_340 0.0210957058 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_153199_010 0.0340580753 - - -
7 Hb_003092_010 0.0423055826 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
8 Hb_007432_040 0.0450041797 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
9 Hb_004032_170 0.0457453972 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
10 Hb_000530_080 0.0475363948 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
11 Hb_000733_170 0.0508161722 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
12 Hb_060416_010 0.0526193143 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001591_020 0.0565480786 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
14 Hb_001892_040 0.0615511198 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
15 Hb_000002_190 0.0634112783 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
16 Hb_000003_520 0.0634112783 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
17 Hb_000005_170 0.0634112783 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
18 Hb_000009_230 0.0634112783 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
19 Hb_000011_110 0.0634112783 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
20 Hb_000012_390 0.0634112783 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_210 Hb_000103_210 Hb_001322_200 Hb_001322_200 Hb_000103_210--Hb_001322_200 Hb_000203_130 Hb_000203_130 Hb_000103_210--Hb_000203_130 Hb_001817_050 Hb_001817_050 Hb_000103_210--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_000103_210--Hb_002235_340 Hb_153199_010 Hb_153199_010 Hb_000103_210--Hb_153199_010 Hb_003092_010 Hb_003092_010 Hb_000103_210--Hb_003092_010 Hb_001322_200--Hb_000203_130 Hb_001322_200--Hb_001817_050 Hb_001322_200--Hb_002235_340 Hb_001322_200--Hb_153199_010 Hb_001322_200--Hb_003092_010 Hb_000203_130--Hb_001817_050 Hb_000203_130--Hb_002235_340 Hb_000203_130--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_000203_130--Hb_007432_040 Hb_001817_050--Hb_002235_340 Hb_001817_050--Hb_153199_010 Hb_001817_050--Hb_007432_040 Hb_002235_340--Hb_153199_010 Hb_002235_340--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_002235_340--Hb_004032_170 Hb_153199_010--Hb_007432_040 Hb_153199_010--Hb_004032_170 Hb_000530_080 Hb_000530_080 Hb_153199_010--Hb_000530_080 Hb_000733_170 Hb_000733_170 Hb_153199_010--Hb_000733_170 Hb_003092_010--Hb_000203_130 Hb_060416_010 Hb_060416_010 Hb_003092_010--Hb_060416_010 Hb_003092_010--Hb_001817_050 Hb_000002_190 Hb_000002_190 Hb_003092_010--Hb_000002_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.263078 32.545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis