Hb_003092_010

Information

Type -
Description -
Location Contig3092: 1761-2876
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00750g
description hypothetical protein
nr
ID XP_006389444.1
description hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
swissprot
ID Q3EAR7
description Probable glycosyltransferase At3g42180 OS=Arabidopsis thaliana GN=At3g42180 PE=2 SV=2
trembl
ID U7E2F1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00750g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable glycosyltransferase at3g42180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32663: 2320-2794 , PASA_asmbl_32664: 2417-2805 , PASA_asmbl_32665: 3051-3147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003092_010 0.0 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
2 Hb_001322_200 0.039656643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000103_210 0.0423055826 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
4 Hb_000203_130 0.0456088521 - - -
5 Hb_060416_010 0.0522535794 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001817_050 0.0544548243 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
7 Hb_000002_190 0.0550937264 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
8 Hb_000003_520 0.0550937264 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
9 Hb_000005_170 0.0550937264 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
10 Hb_000009_230 0.0550937264 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
11 Hb_000011_110 0.0550937264 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
12 Hb_000012_390 0.0550937264 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000018_070 0.0550937264 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
14 Hb_000020_130 0.0550937264 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
15 Hb_000024_090 0.0550937264 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_560 0.0550937264 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000028_310 0.0550937264 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
18 Hb_000037_140 0.0550937264 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
19 Hb_000046_420 0.0550937264 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
20 Hb_000054_180 0.0550937264 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]

Gene co-expression network

sample Hb_003092_010 Hb_003092_010 Hb_001322_200 Hb_001322_200 Hb_003092_010--Hb_001322_200 Hb_000103_210 Hb_000103_210 Hb_003092_010--Hb_000103_210 Hb_000203_130 Hb_000203_130 Hb_003092_010--Hb_000203_130 Hb_060416_010 Hb_060416_010 Hb_003092_010--Hb_060416_010 Hb_001817_050 Hb_001817_050 Hb_003092_010--Hb_001817_050 Hb_000002_190 Hb_000002_190 Hb_003092_010--Hb_000002_190 Hb_001322_200--Hb_000103_210 Hb_001322_200--Hb_000203_130 Hb_001322_200--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_001322_200--Hb_002235_340 Hb_153199_010 Hb_153199_010 Hb_001322_200--Hb_153199_010 Hb_000103_210--Hb_000203_130 Hb_000103_210--Hb_001817_050 Hb_000103_210--Hb_002235_340 Hb_000103_210--Hb_153199_010 Hb_000203_130--Hb_001817_050 Hb_000203_130--Hb_002235_340 Hb_000203_130--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_000203_130--Hb_007432_040 Hb_008493_020 Hb_008493_020 Hb_060416_010--Hb_008493_020 Hb_060416_010--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_060416_010--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_060416_010--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_060416_010--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_060416_010--Hb_000011_110 Hb_001817_050--Hb_002235_340 Hb_001817_050--Hb_153199_010 Hb_001817_050--Hb_007432_040 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_000002_190--Hb_000012_390 Hb_000018_070 Hb_000018_070 Hb_000002_190--Hb_000018_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0217521 0 0.0335057 9.06716 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis