Hb_008493_020

Information

Type -
Description -
Location Contig8493: 10853-11115
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAB22162.1
description linamarase [Manihot esculenta]
swissprot
ID -
description -
trembl
ID Q41172
description Linamarase OS=Manihot esculenta GN=linamarase PE=2 SV=1
Gene Ontology
ID GO:0016787
description beta glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008493_020 0.0 - - linamarase [Manihot esculenta]
2 Hb_060416_010 0.042641313 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009896_010 0.0443528562 - - ABC transporter G family member 15 [Morus notabilis]
4 Hb_053058_010 0.0468785502 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001634_070 0.0515025427 - - conserved hypothetical protein [Ricinus communis]
6 Hb_103942_010 0.0516713869 - - rab5A-like protein [Trichinella spiralis]
7 Hb_001322_200 0.0636245904 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_210 0.064785623 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
9 Hb_000203_130 0.0664446423 - - -
10 Hb_003092_010 0.071608702 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
11 Hb_001817_050 0.0716771194 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
12 Hb_002235_340 0.0731643776 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000002_190 0.0791679784 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
14 Hb_000003_520 0.0791679784 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
15 Hb_000005_170 0.0791679784 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
16 Hb_000009_230 0.0791679784 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
17 Hb_000011_110 0.0791679784 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
18 Hb_000012_390 0.0791679784 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000018_070 0.0791679784 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
20 Hb_000020_130 0.0791679784 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]

Gene co-expression network

sample Hb_008493_020 Hb_008493_020 Hb_060416_010 Hb_060416_010 Hb_008493_020--Hb_060416_010 Hb_009896_010 Hb_009896_010 Hb_008493_020--Hb_009896_010 Hb_053058_010 Hb_053058_010 Hb_008493_020--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_008493_020--Hb_001634_070 Hb_103942_010 Hb_103942_010 Hb_008493_020--Hb_103942_010 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_000002_190 Hb_000002_190 Hb_060416_010--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_060416_010--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_060416_010--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_060416_010--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_060416_010--Hb_000011_110 Hb_009896_010--Hb_053058_010 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_009896_010--Hb_001634_070 Hb_053058_010--Hb_001634_070 Hb_001597_040 Hb_001597_040 Hb_053058_010--Hb_001597_040 Hb_050786_010 Hb_050786_010 Hb_053058_010--Hb_050786_010 Hb_053058_010--Hb_060416_010 Hb_001634_070--Hb_060416_010 Hb_001634_070--Hb_001597_040 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020 Hb_103942_010--Hb_060416_010 Hb_103942_010--Hb_009896_010 Hb_103942_010--Hb_053058_010 Hb_103942_010--Hb_001634_070 Hb_103942_010--Hb_000002_190 Hb_000103_210 Hb_000103_210 Hb_001322_200--Hb_000103_210 Hb_000203_130 Hb_000203_130 Hb_001322_200--Hb_000203_130 Hb_001817_050 Hb_001817_050 Hb_001322_200--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_001322_200--Hb_002235_340 Hb_153199_010 Hb_153199_010 Hb_001322_200--Hb_153199_010 Hb_003092_010 Hb_003092_010 Hb_001322_200--Hb_003092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.3961 2804.91 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 22.0476

CAGE analysis