Hb_001597_040

Information

Type -
Description -
Location Contig1597: 127823-129796
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001597_040 0.0 - - -
2 Hb_053058_010 0.0690439604 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001634_070 0.0706966613 - - conserved hypothetical protein [Ricinus communis]
4 Hb_050786_010 0.0788511075 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
5 Hb_009896_010 0.0857310706 - - ABC transporter G family member 15 [Morus notabilis]
6 Hb_008493_020 0.0858383021 - - linamarase [Manihot esculenta]
7 Hb_002186_190 0.0928693169 - - -
8 Hb_001454_030 0.0966111332 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
9 Hb_009470_010 0.0972588489 - - -
10 Hb_103942_020 0.098392093 - - unknown [Zea mays]
11 Hb_060416_010 0.0985432349 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000645_040 0.0996408544 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_103942_010 0.0998667722 - - rab5A-like protein [Trichinella spiralis]
14 Hb_000296_030 0.1010864979 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
15 Hb_000027_020 0.1013710057 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
16 Hb_000628_080 0.1067714905 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
17 Hb_000637_090 0.1076407376 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
18 Hb_007441_320 0.1100338887 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
19 Hb_002215_020 0.1103582771 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
20 Hb_001956_170 0.1103678501 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]

Gene co-expression network

sample Hb_001597_040 Hb_001597_040 Hb_053058_010 Hb_053058_010 Hb_001597_040--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_001597_040--Hb_001634_070 Hb_050786_010 Hb_050786_010 Hb_001597_040--Hb_050786_010 Hb_009896_010 Hb_009896_010 Hb_001597_040--Hb_009896_010 Hb_008493_020 Hb_008493_020 Hb_001597_040--Hb_008493_020 Hb_002186_190 Hb_002186_190 Hb_001597_040--Hb_002186_190 Hb_053058_010--Hb_008493_020 Hb_053058_010--Hb_009896_010 Hb_053058_010--Hb_001634_070 Hb_053058_010--Hb_050786_010 Hb_060416_010 Hb_060416_010 Hb_053058_010--Hb_060416_010 Hb_001634_070--Hb_008493_020 Hb_001634_070--Hb_060416_010 Hb_001634_070--Hb_009896_010 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020 Hb_050786_010--Hb_008493_020 Hb_050786_010--Hb_060416_010 Hb_000645_040 Hb_000645_040 Hb_050786_010--Hb_000645_040 Hb_050786_010--Hb_001634_070 Hb_009896_010--Hb_008493_020 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_008493_020--Hb_060416_010 Hb_103942_010 Hb_103942_010 Hb_008493_020--Hb_103942_010 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_002186_190--Hb_000637_090 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163991 0.251611 39.6547 0 0.211229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.183703 0.513636

CAGE analysis