Hb_000645_040

Information

Type transcription factor
Description TF Family: GNAT
Location Contig645: 56785-58566
Sequence    

Annotation

kegg
ID rcu:RCOM_1000500
description N-acetyltransferase, putative
nr
ID XP_002519221.1
description N-acetyltransferase, putative [Ricinus communis]
swissprot
ID O64815
description Probable N-acetyltransferase HLS1-like OS=Arabidopsis thaliana GN=At2g23060 PE=2 SV=1
trembl
ID B9RZQ2
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_1000500 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable n-acetyltransferase hls1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52252: 56679-58705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_040 0.0 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
2 Hb_000224_070 0.0616576826 - - -
3 Hb_000027_020 0.0638400533 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
4 Hb_001817_050 0.0691039541 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
5 Hb_002235_340 0.0691263287 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_118941_010 0.0698388001 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
7 Hb_000203_130 0.0704261939 - - -
8 Hb_153199_010 0.0707212865 - - -
9 Hb_000325_090 0.0711819134 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
10 Hb_000103_210 0.0716734801 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
11 Hb_001322_200 0.0731488391 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007432_040 0.0738760767 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
13 Hb_004032_170 0.0741450546 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
14 Hb_000530_080 0.0748223065 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
15 Hb_000733_170 0.0761598873 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
16 Hb_001591_020 0.078783065 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
17 Hb_001277_390 0.0802201972 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_001892_040 0.0813465377 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_005699_100 0.0833708033 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
20 Hb_053058_010 0.0857591505 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000645_040 Hb_000645_040 Hb_000224_070 Hb_000224_070 Hb_000645_040--Hb_000224_070 Hb_000027_020 Hb_000027_020 Hb_000645_040--Hb_000027_020 Hb_001817_050 Hb_001817_050 Hb_000645_040--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_000645_040--Hb_002235_340 Hb_118941_010 Hb_118941_010 Hb_000645_040--Hb_118941_010 Hb_000203_130 Hb_000203_130 Hb_000645_040--Hb_000203_130 Hb_001277_390 Hb_001277_390 Hb_000224_070--Hb_001277_390 Hb_000224_070--Hb_118941_010 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_120496_010 Hb_120496_010 Hb_000224_070--Hb_120496_010 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040 Hb_005699_100 Hb_005699_100 Hb_000027_020--Hb_005699_100 Hb_000027_020--Hb_118941_010 Hb_002105_070 Hb_002105_070 Hb_000027_020--Hb_002105_070 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200 Hb_001817_050--Hb_002235_340 Hb_001817_050--Hb_000203_130 Hb_153199_010 Hb_153199_010 Hb_001817_050--Hb_153199_010 Hb_000103_210 Hb_000103_210 Hb_001817_050--Hb_000103_210 Hb_001817_050--Hb_001322_200 Hb_007432_040 Hb_007432_040 Hb_001817_050--Hb_007432_040 Hb_002235_340--Hb_153199_010 Hb_002235_340--Hb_000203_130 Hb_002235_340--Hb_000103_210 Hb_002235_340--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_002235_340--Hb_004032_170 Hb_118941_010--Hb_001277_390 Hb_118941_010--Hb_153199_010 Hb_118941_010--Hb_007432_040 Hb_118941_010--Hb_004032_170 Hb_000203_130--Hb_000103_210 Hb_000203_130--Hb_001322_200 Hb_000203_130--Hb_153199_010 Hb_000203_130--Hb_007432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0146218 0.0686555 5.40923 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0380063 0

CAGE analysis