Hb_001277_390

Information

Type -
Description -
Location Contig1277: 384520-385104
Sequence    

Annotation

kegg
ID rcu:RCOM_0911080
description hypothetical protein
nr
ID XP_012069700.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
swissprot
ID Q2V3I3
description EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1 SV=1
trembl
ID A0A067L843
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02227 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08502: 384325-384654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_390 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
2 Hb_118941_010 0.0188139439 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000224_070 0.0420485721 - - -
4 Hb_120496_010 0.0559318952 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
5 Hb_001591_020 0.0709172676 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
6 Hb_000733_170 0.0710722 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
7 Hb_001892_040 0.0711816739 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_000530_080 0.0713776884 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
9 Hb_004032_170 0.0716097653 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
10 Hb_007432_040 0.0717190981 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
11 Hb_005976_030 0.0734255368 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
12 Hb_153199_010 0.0741978957 - - -
13 Hb_000258_010 0.0748885265 - - lipid transfer precursor protein [Hevea brasiliensis]
14 Hb_000027_020 0.0772808201 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
15 Hb_002235_340 0.0789944655 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_069237_010 0.0796696156 - - -
17 Hb_000645_040 0.0802201972 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_001817_050 0.0803437179 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
19 Hb_001247_050 0.0804734293 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
20 Hb_000628_080 0.0813481866 - - hypothetical protein JCGZ_04283 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_390 Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_001277_390--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_001277_390--Hb_000224_070 Hb_120496_010 Hb_120496_010 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_118941_010--Hb_000224_070 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_000224_070--Hb_120496_010 Hb_000224_070--Hb_001892_040 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_120496_010--Hb_118941_010 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_001591_020--Hb_001892_040 Hb_001591_020--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_001591_020--Hb_000530_080 Hb_001591_020--Hb_004032_170 Hb_001591_020--Hb_007432_040 Hb_005976_030 Hb_005976_030 Hb_001591_020--Hb_005976_030 Hb_000733_170--Hb_000530_080 Hb_000733_170--Hb_004032_170 Hb_000733_170--Hb_007432_040 Hb_000733_170--Hb_001892_040 Hb_000733_170--Hb_153199_010 Hb_001892_040--Hb_005976_030 Hb_001892_040--Hb_000530_080 Hb_001892_040--Hb_004032_170 Hb_001892_040--Hb_007432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0634838 0.15104 6.12129 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis