Hb_000325_090

Information

Type transcription factor
Description TF Family: bHLH
Location Contig325: 239468-240436
Sequence    

Annotation

kegg
ID cit:102607461
description transcription factor bHLH135-like
nr
ID XP_012483673.1
description PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
swissprot
ID Q9LJX1
description Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1
trembl
ID A0A0B0MSC8
description Transcription factor protein OS=Gossypium arboreum GN=F383_28314 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh135

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34263: 239285-240707
cDNA
(Sanger)
(ID:Location)		 039_B17.ab1: 239285-240707 , 039_N02.ab1: 239289-240607 , 040_M05.ab1: 239285-240707 , 053_I13.ab1: 239285-240707

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000325_090 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
2 Hb_000258_010 0.0457299921 - - lipid transfer precursor protein [Hevea brasiliensis]
3 Hb_005976_030 0.0458658755 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
4 Hb_069237_010 0.0476930306 - - -
5 Hb_001892_040 0.0486391233 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
6 Hb_003729_040 0.0496805668 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_001591_020 0.0506303788 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_130357_010 0.0514756887 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_000733_170 0.0534164863 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
10 Hb_000530_080 0.0552189367 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
11 Hb_004032_170 0.0562594132 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
12 Hb_007432_040 0.0567008153 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
13 Hb_001347_020 0.0571036012 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
14 Hb_000422_100 0.0578707452 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
15 Hb_111442_010 0.0596440543 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
16 Hb_000628_090 0.0632889362 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
17 Hb_153199_010 0.0638369946 - - -
18 Hb_054865_110 0.06416253 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000194_040 0.0644891073 - - carbonic anhydrase, putative [Ricinus communis]
20 Hb_000224_070 0.0682727352 - - -

Gene co-expression network

sample Hb_000325_090 Hb_000325_090 Hb_000258_010 Hb_000258_010 Hb_000325_090--Hb_000258_010 Hb_005976_030 Hb_005976_030 Hb_000325_090--Hb_005976_030 Hb_069237_010 Hb_069237_010 Hb_000325_090--Hb_069237_010 Hb_001892_040 Hb_001892_040 Hb_000325_090--Hb_001892_040 Hb_003729_040 Hb_003729_040 Hb_000325_090--Hb_003729_040 Hb_001591_020 Hb_001591_020 Hb_000325_090--Hb_001591_020 Hb_000258_010--Hb_005976_030 Hb_000258_010--Hb_069237_010 Hb_000258_010--Hb_001892_040 Hb_000258_010--Hb_003729_040 Hb_130357_010 Hb_130357_010 Hb_000258_010--Hb_130357_010 Hb_000258_010--Hb_001591_020 Hb_005976_030--Hb_001892_040 Hb_005976_030--Hb_069237_010 Hb_005976_030--Hb_001591_020 Hb_005976_030--Hb_003729_040 Hb_000733_170 Hb_000733_170 Hb_005976_030--Hb_000733_170 Hb_069237_010--Hb_003729_040 Hb_069237_010--Hb_130357_010 Hb_001347_020 Hb_001347_020 Hb_069237_010--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_069237_010--Hb_000422_100 Hb_001892_040--Hb_001591_020 Hb_001892_040--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_001892_040--Hb_000530_080 Hb_004032_170 Hb_004032_170 Hb_001892_040--Hb_004032_170 Hb_007432_040 Hb_007432_040 Hb_001892_040--Hb_007432_040 Hb_003729_040--Hb_130357_010 Hb_003729_040--Hb_001347_020 Hb_003729_040--Hb_000422_100 Hb_111442_010 Hb_111442_010 Hb_003729_040--Hb_111442_010 Hb_001591_020--Hb_000733_170 Hb_001591_020--Hb_000530_080 Hb_001591_020--Hb_004032_170 Hb_001591_020--Hb_007432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.7117 79.3913 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.344037 0

CAGE analysis