Hb_000224_070

Information

Type -
Description -
Location Contig224: 48197-48592
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005509
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23284: 14041-48737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_070 0.0 - - -
2 Hb_001277_390 0.0420485721 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
3 Hb_118941_010 0.0482461864 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000645_040 0.0616576826 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
5 Hb_000325_090 0.0682727352 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
6 Hb_120496_010 0.0732546413 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
7 Hb_001892_040 0.0782220314 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_001591_020 0.0785710501 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
9 Hb_005976_030 0.0788241 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
10 Hb_000733_170 0.0793762511 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_000258_010 0.0796262681 - - lipid transfer precursor protein [Hevea brasiliensis]
12 Hb_000530_080 0.0800246413 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
13 Hb_004032_170 0.0804343013 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
14 Hb_007432_040 0.0806150726 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
15 Hb_000027_020 0.0826458013 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
16 Hb_069237_010 0.0828354334 - - -
17 Hb_153199_010 0.0840041711 - - -
18 Hb_003729_040 0.0849388195 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_000381_140 0.0863663289 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
20 Hb_130357_010 0.0866613173 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_000224_070 Hb_000224_070 Hb_001277_390 Hb_001277_390 Hb_000224_070--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_120496_010 Hb_120496_010 Hb_000224_070--Hb_120496_010 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001277_390--Hb_001892_040 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000645_040--Hb_000027_020 Hb_001817_050 Hb_001817_050 Hb_000645_040--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_000645_040--Hb_002235_340 Hb_000645_040--Hb_118941_010 Hb_000203_130 Hb_000203_130 Hb_000645_040--Hb_000203_130 Hb_000258_010 Hb_000258_010 Hb_000325_090--Hb_000258_010 Hb_005976_030 Hb_005976_030 Hb_000325_090--Hb_005976_030 Hb_069237_010 Hb_069237_010 Hb_000325_090--Hb_069237_010 Hb_000325_090--Hb_001892_040 Hb_003729_040 Hb_003729_040 Hb_000325_090--Hb_003729_040 Hb_000325_090--Hb_001591_020 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_120496_010--Hb_118941_010 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_001892_040--Hb_001591_020 Hb_001892_040--Hb_000733_170 Hb_001892_040--Hb_005976_030 Hb_000530_080 Hb_000530_080 Hb_001892_040--Hb_000530_080 Hb_001892_040--Hb_004032_170 Hb_001892_040--Hb_007432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.769333 2.35647 83.5501 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.28891 0

CAGE analysis