Hb_002105_070

Information

Type -
Description -
Location Contig2105: 61841-67872
Sequence    

Annotation

kegg
ID rcu:RCOM_0757630
description hypothetical protein
nr
ID XP_002526428.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID B9SKA9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0757630 PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_116486_010 0.0189488324 - - MADS-box transcription factor, partial [Sapria himalayana]
3 Hb_005694_140 0.0251630122 - - protein with unknown function [Ricinus communis]
4 Hb_000027_020 0.0714734944 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
5 Hb_000629_140 0.0760892774 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
6 Hb_005699_100 0.0849398985 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
7 Hb_002853_010 0.0919049962 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000479_100 0.0950223571 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
9 Hb_000048_120 0.099435442 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
10 Hb_007441_320 0.0999164435 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
11 Hb_125152_010 0.1007279043 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_001634_070 0.1053025999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000002_190 0.1056015962 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
14 Hb_000003_520 0.1056015962 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
15 Hb_000005_170 0.1056015962 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
16 Hb_000009_230 0.1056015962 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
17 Hb_000011_110 0.1056015962 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
18 Hb_000012_390 0.1056015962 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000018_070 0.1056015962 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
20 Hb_000020_130 0.1056015962 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]

Gene co-expression network

sample Hb_002105_070 Hb_002105_070 Hb_116486_010 Hb_116486_010 Hb_002105_070--Hb_116486_010 Hb_005694_140 Hb_005694_140 Hb_002105_070--Hb_005694_140 Hb_000027_020 Hb_000027_020 Hb_002105_070--Hb_000027_020 Hb_000629_140 Hb_000629_140 Hb_002105_070--Hb_000629_140 Hb_005699_100 Hb_005699_100 Hb_002105_070--Hb_005699_100 Hb_002853_010 Hb_002853_010 Hb_002105_070--Hb_002853_010 Hb_116486_010--Hb_005694_140 Hb_116486_010--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_116486_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_116486_010--Hb_125152_010 Hb_116486_010--Hb_000027_020 Hb_005694_140--Hb_000629_140 Hb_005694_140--Hb_000048_120 Hb_005694_140--Hb_125152_010 Hb_005694_140--Hb_000027_020 Hb_000027_020--Hb_005699_100 Hb_118941_010 Hb_118941_010 Hb_000027_020--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200 Hb_000629_140--Hb_000048_120 Hb_000629_140--Hb_125152_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_137821_010 Hb_137821_010 Hb_000629_140--Hb_137821_010 Hb_000002_190 Hb_000002_190 Hb_005699_100--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_005699_100--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_005699_100--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_005699_100--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_005699_100--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_005699_100--Hb_000012_390 Hb_000479_100 Hb_000479_100 Hb_002853_010--Hb_000479_100 Hb_106677_010 Hb_106677_010 Hb_002853_010--Hb_106677_010 Hb_002853_010--Hb_116486_010 Hb_002853_010--Hb_005694_140 Hb_002853_010--Hb_000629_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128875 0 5.69602 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis