Hb_009501_010

Information

Type -
Description -
Location Contig9501: 1229-1489
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009501_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_001998_160 0.0204008441 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
3 Hb_000318_070 0.036781121 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
4 Hb_125152_010 0.0381836184 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_000048_120 0.0395141729 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
6 Hb_170674_020 0.0425484632 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
7 Hb_002217_480 0.0431469059 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
8 Hb_013399_040 0.0512872805 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
9 Hb_000327_050 0.057808036 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
10 Hb_000629_140 0.0633570938 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
11 Hb_002304_120 0.065123335 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000321_020 0.0712164322 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
13 Hb_004148_030 0.0805302563 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
14 Hb_041067_010 0.0859722009 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
15 Hb_137821_010 0.0864344288 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
16 Hb_001147_120 0.0913634087 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
17 Hb_000527_090 0.0923080627 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_001825_030 0.0952987714 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
19 Hb_000284_090 0.0959342697 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_002820_100 0.1018369753 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_009501_010 Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_009501_010--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_009501_010--Hb_000318_070 Hb_125152_010 Hb_125152_010 Hb_009501_010--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_009501_010--Hb_000048_120 Hb_170674_020 Hb_170674_020 Hb_009501_010--Hb_170674_020 Hb_002217_480 Hb_002217_480 Hb_009501_010--Hb_002217_480 Hb_001998_160--Hb_000318_070 Hb_001998_160--Hb_170674_020 Hb_013399_040 Hb_013399_040 Hb_001998_160--Hb_013399_040 Hb_001998_160--Hb_002217_480 Hb_000327_050 Hb_000327_050 Hb_001998_160--Hb_000327_050 Hb_000318_070--Hb_170674_020 Hb_000318_070--Hb_013399_040 Hb_000318_070--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_000318_070--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_000318_070--Hb_000321_020 Hb_125152_010--Hb_000048_120 Hb_000629_140 Hb_000629_140 Hb_125152_010--Hb_000629_140 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_137821_010 Hb_137821_010 Hb_125152_010--Hb_137821_010 Hb_000048_120--Hb_000629_140 Hb_000048_120--Hb_001998_160 Hb_000048_120--Hb_137821_010 Hb_000048_120--Hb_002217_480 Hb_170674_020--Hb_013399_040 Hb_170674_020--Hb_000327_050 Hb_170674_020--Hb_002304_120 Hb_170674_020--Hb_000321_020 Hb_002217_480--Hb_000318_070 Hb_002217_480--Hb_170674_020 Hb_002217_480--Hb_013399_040 Hb_004148_030 Hb_004148_030 Hb_002217_480--Hb_004148_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.04422 0 19.3195 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis