Hb_137821_010

Information

Type -
Description -
Location Contig137821: 338-851
Sequence    

Annotation

kegg
ID egr:104424064
description probable LRR receptor-like serine/threonine-protein kinase At1g05700
nr
ID KDO39437.1
description hypothetical protein CISIN_1g034189mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DK85
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034189mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at1g53430 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137821_010 0.0 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
2 Hb_003747_080 0.0534797051 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_005463_120 0.056857087 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_000527_090 0.0573484772 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_000048_120 0.0736611845 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
6 Hb_125152_010 0.0737865205 - - Ankyrin repeat family protein, putative [Theobroma cacao]
7 Hb_000629_140 0.0754834327 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
8 Hb_009501_010 0.0864344288 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_000203_110 0.0865432357 - - -
10 Hb_002217_480 0.0880050386 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
11 Hb_041067_010 0.0884751181 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
12 Hb_006452_080 0.0911706646 - - Nodulin, putative [Ricinus communis]
13 Hb_181191_010 0.0949830537 - - kinase, putative [Ricinus communis]
14 Hb_120496_010 0.0967903729 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
15 Hb_001998_160 0.0986275336 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
16 Hb_007472_060 0.0988140923 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
17 Hb_005694_140 0.1005341584 - - protein with unknown function [Ricinus communis]
18 Hb_015085_010 0.1008603908 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
19 Hb_011689_090 0.1023303039 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
20 Hb_007441_320 0.102770214 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]

Gene co-expression network

sample Hb_137821_010 Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_137821_010--Hb_003747_080 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_000527_090 Hb_000527_090 Hb_137821_010--Hb_000527_090 Hb_000048_120 Hb_000048_120 Hb_137821_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_137821_010--Hb_125152_010 Hb_000629_140 Hb_000629_140 Hb_137821_010--Hb_000629_140 Hb_000203_110 Hb_000203_110 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_005463_120--Hb_003747_080 Hb_041067_010 Hb_041067_010 Hb_005463_120--Hb_041067_010 Hb_005463_120--Hb_000527_090 Hb_002217_480 Hb_002217_480 Hb_005463_120--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_005463_120--Hb_015085_010 Hb_006452_080 Hb_006452_080 Hb_000527_090--Hb_006452_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000527_090--Hb_000048_120 Hb_000048_120--Hb_125152_010 Hb_000048_120--Hb_000629_140 Hb_009501_010 Hb_009501_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_000048_120--Hb_002217_480 Hb_125152_010--Hb_000629_140 Hb_125152_010--Hb_009501_010 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_005694_140 Hb_005694_140 Hb_000629_140--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_000629_140--Hb_116486_010 Hb_000629_140--Hb_009501_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30635 37.6618 5.23627 530.023 0.615496 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis