Hb_005694_140

Information

Type -
Description -
Location Contig5694: 101496-108131
Sequence    

Annotation

kegg
ID rcu:RCOM_0143940
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002533328.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LNK1
description Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1
trembl
ID B9T509
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0143940 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_140 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_116486_010 0.0062323761 - - MADS-box transcription factor, partial [Sapria himalayana]
3 Hb_002105_070 0.0251630122 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000629_140 0.0513881881 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
5 Hb_000048_120 0.0750686122 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
6 Hb_125152_010 0.0763809847 - - Ankyrin repeat family protein, putative [Theobroma cacao]
7 Hb_000027_020 0.0892172027 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
8 Hb_002853_010 0.0904846126 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007441_320 0.0981418531 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
10 Hb_000479_100 0.1002327321 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
11 Hb_137821_010 0.1005341584 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
12 Hb_000527_090 0.1051281094 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_005699_100 0.1063431619 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
14 Hb_120496_010 0.1117526651 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
15 Hb_009501_010 0.1137184139 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_106677_010 0.1148128655 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
17 Hb_003747_080 0.1186087645 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_118941_010 0.1207202262 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_001634_070 0.1215861182 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012753_140 0.1265922801 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_005694_140 Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_005694_140--Hb_116486_010 Hb_002105_070 Hb_002105_070 Hb_005694_140--Hb_002105_070 Hb_000629_140 Hb_000629_140 Hb_005694_140--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_005694_140--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_005694_140--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_005694_140--Hb_000027_020 Hb_116486_010--Hb_002105_070 Hb_116486_010--Hb_000629_140 Hb_116486_010--Hb_000048_120 Hb_116486_010--Hb_125152_010 Hb_116486_010--Hb_000027_020 Hb_002105_070--Hb_000027_020 Hb_002105_070--Hb_000629_140 Hb_005699_100 Hb_005699_100 Hb_002105_070--Hb_005699_100 Hb_002853_010 Hb_002853_010 Hb_002105_070--Hb_002853_010 Hb_000629_140--Hb_000048_120 Hb_000629_140--Hb_125152_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_137821_010 Hb_137821_010 Hb_000629_140--Hb_137821_010 Hb_000048_120--Hb_125152_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_000048_120--Hb_137821_010 Hb_002217_480 Hb_002217_480 Hb_000048_120--Hb_002217_480 Hb_125152_010--Hb_009501_010 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_125152_010--Hb_137821_010 Hb_000027_020--Hb_005699_100 Hb_118941_010 Hb_118941_010 Hb_000027_020--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0339964 0 1.03885 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis