Hb_002853_010

Information

Type -
Description -
Location Contig2853: 21505-21720
Sequence    

Annotation

kegg
ID rcu:RCOM_0852440
description hypothetical protein
nr
ID XP_002517396.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0852440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002853_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000479_100 0.0259925538 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
3 Hb_106677_010 0.0417531773 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
4 Hb_116486_010 0.0901909643 - - MADS-box transcription factor, partial [Sapria himalayana]
5 Hb_005694_140 0.0904846126 - - protein with unknown function [Ricinus communis]
6 Hb_002105_070 0.0919049962 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000629_140 0.1074595956 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
8 Hb_000027_020 0.1075574294 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
9 Hb_005699_100 0.1117776743 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
10 Hb_001804_020 0.1139482671 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
11 Hb_005276_180 0.1194596129 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
12 Hb_007472_060 0.1216358043 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
13 Hb_001688_040 0.1217341861 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000048_120 0.1218316765 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
15 Hb_000056_140 0.1224233205 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
16 Hb_125152_010 0.1227099803 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_003058_090 0.1231076378 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
18 Hb_007441_320 0.1233431169 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
19 Hb_001946_420 0.1268934488 - - protein with unknown function [Ricinus communis]
20 Hb_092416_020 0.1281154637 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002853_010 Hb_002853_010 Hb_000479_100 Hb_000479_100 Hb_002853_010--Hb_000479_100 Hb_106677_010 Hb_106677_010 Hb_002853_010--Hb_106677_010 Hb_116486_010 Hb_116486_010 Hb_002853_010--Hb_116486_010 Hb_005694_140 Hb_005694_140 Hb_002853_010--Hb_005694_140 Hb_002105_070 Hb_002105_070 Hb_002853_010--Hb_002105_070 Hb_000629_140 Hb_000629_140 Hb_002853_010--Hb_000629_140 Hb_000479_100--Hb_106677_010 Hb_000479_100--Hb_002105_070 Hb_005699_100 Hb_005699_100 Hb_000479_100--Hb_005699_100 Hb_000479_100--Hb_116486_010 Hb_005276_180 Hb_005276_180 Hb_000479_100--Hb_005276_180 Hb_001688_040 Hb_001688_040 Hb_106677_010--Hb_001688_040 Hb_000056_140 Hb_000056_140 Hb_106677_010--Hb_000056_140 Hb_106677_010--Hb_005276_180 Hb_001946_420 Hb_001946_420 Hb_106677_010--Hb_001946_420 Hb_116486_010--Hb_005694_140 Hb_116486_010--Hb_002105_070 Hb_116486_010--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_116486_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_116486_010--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_116486_010--Hb_000027_020 Hb_005694_140--Hb_002105_070 Hb_005694_140--Hb_000629_140 Hb_005694_140--Hb_000048_120 Hb_005694_140--Hb_125152_010 Hb_005694_140--Hb_000027_020 Hb_002105_070--Hb_000027_020 Hb_002105_070--Hb_000629_140 Hb_002105_070--Hb_005699_100 Hb_000629_140--Hb_000048_120 Hb_000629_140--Hb_125152_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_137821_010 Hb_137821_010 Hb_000629_140--Hb_137821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.69216 0 23.4221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.396361 0

CAGE analysis