Hb_002217_480

Information

Type -
Description -
Location Contig2217: 423655-433387
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15700g
description POPTRDRAFT_769847; hypothetical protein
nr
ID XP_011010636.1
description PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HX38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22961: 423655-423979 , PASA_asmbl_22962: 432930-433326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_480 0.0 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
2 Hb_001998_160 0.0340516413 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
3 Hb_000318_070 0.0346075934 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
4 Hb_170674_020 0.0365943741 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_013399_040 0.0409976584 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
6 Hb_004148_030 0.0422946222 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
7 Hb_009501_010 0.0431469059 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000327_050 0.045119904 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
9 Hb_002304_120 0.050358354 - - conserved hypothetical protein [Ricinus communis]
10 Hb_041067_010 0.0523888518 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
11 Hb_000321_020 0.0550899016 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
12 Hb_001147_120 0.0722375059 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
13 Hb_125152_010 0.07345383 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_000048_120 0.0746353189 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
15 Hb_001825_030 0.0757662286 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
16 Hb_000284_090 0.0763400105 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_032280_010 0.086808652 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_137821_010 0.0880050386 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
19 Hb_001053_100 0.0942617071 - - DNA-damage-inducible protein f, putative [Ricinus communis]
20 Hb_000527_090 0.0950261085 - - serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002217_480 Hb_002217_480 Hb_001998_160 Hb_001998_160 Hb_002217_480--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_002217_480--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_002217_480--Hb_170674_020 Hb_013399_040 Hb_013399_040 Hb_002217_480--Hb_013399_040 Hb_004148_030 Hb_004148_030 Hb_002217_480--Hb_004148_030 Hb_009501_010 Hb_009501_010 Hb_002217_480--Hb_009501_010 Hb_001998_160--Hb_000318_070 Hb_001998_160--Hb_009501_010 Hb_001998_160--Hb_170674_020 Hb_001998_160--Hb_013399_040 Hb_000327_050 Hb_000327_050 Hb_001998_160--Hb_000327_050 Hb_000318_070--Hb_170674_020 Hb_000318_070--Hb_013399_040 Hb_000318_070--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_000318_070--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_000318_070--Hb_000321_020 Hb_170674_020--Hb_013399_040 Hb_170674_020--Hb_000327_050 Hb_170674_020--Hb_002304_120 Hb_170674_020--Hb_000321_020 Hb_013399_040--Hb_000327_050 Hb_013399_040--Hb_002304_120 Hb_013399_040--Hb_000321_020 Hb_004148_030--Hb_002304_120 Hb_004148_030--Hb_000321_020 Hb_004148_030--Hb_000327_050 Hb_004148_030--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_004148_030--Hb_001147_120 Hb_009501_010--Hb_000318_070 Hb_125152_010 Hb_125152_010 Hb_009501_010--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_009501_010--Hb_000048_120 Hb_009501_010--Hb_170674_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.708063 0.013627 5.42105 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis