Hb_000327_050

Information

Type -
Description -
Location Contig327: 47415-52594
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04470g
description POPTRDRAFT_803195; hypothetical protein
nr
ID XP_011034712.1
description PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
swissprot
ID Q9M1E2
description Protein NRT1/ PTR FAMILY 2.7 OS=Arabidopsis thaliana GN=NPF2.7 PE=1 SV=1
trembl
ID B9HLZ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04470g PE=4 SV=2
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34359: 48099-49711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_050 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
2 Hb_013399_040 0.0065453149 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
3 Hb_002304_120 0.0073492103 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000321_020 0.0134754483 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
5 Hb_170674_020 0.0153082078 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
6 Hb_000318_070 0.0210856144 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
7 Hb_001147_120 0.0337612455 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
8 Hb_001998_160 0.0374673325 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
9 Hb_001825_030 0.0377285955 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
10 Hb_000284_090 0.0383693998 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_004148_030 0.0444763394 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
12 Hb_002217_480 0.045119904 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
13 Hb_009501_010 0.057808036 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_012760_080 0.0613097436 - - conserved hypothetical protein [Ricinus communis]
15 Hb_058095_010 0.0739009436 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
16 Hb_041067_010 0.0796967625 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
17 Hb_032280_010 0.0917971268 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_125152_010 0.0956602671 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_000048_120 0.096973417 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
20 Hb_000099_180 0.1020216428 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]

Gene co-expression network

sample Hb_000327_050 Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_000327_050--Hb_013399_040 Hb_002304_120 Hb_002304_120 Hb_000327_050--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_000327_050--Hb_000321_020 Hb_170674_020 Hb_170674_020 Hb_000327_050--Hb_170674_020 Hb_000318_070 Hb_000318_070 Hb_000327_050--Hb_000318_070 Hb_001147_120 Hb_001147_120 Hb_000327_050--Hb_001147_120 Hb_013399_040--Hb_170674_020 Hb_013399_040--Hb_002304_120 Hb_013399_040--Hb_000318_070 Hb_013399_040--Hb_000321_020 Hb_001998_160 Hb_001998_160 Hb_013399_040--Hb_001998_160 Hb_002304_120--Hb_000321_020 Hb_002304_120--Hb_170674_020 Hb_002304_120--Hb_001147_120 Hb_002304_120--Hb_000318_070 Hb_000321_020--Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_000321_020--Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_000321_020--Hb_000284_090 Hb_170674_020--Hb_000318_070 Hb_170674_020--Hb_001998_160 Hb_170674_020--Hb_000321_020 Hb_000318_070--Hb_001998_160 Hb_000318_070--Hb_000321_020 Hb_001147_120--Hb_001825_030 Hb_001147_120--Hb_000284_090 Hb_012760_080 Hb_012760_080 Hb_001147_120--Hb_012760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73677 0 10.7206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis