Hb_012760_080

Information

Type -
Description -
Location Contig12760: 52883-53533
Sequence    

Annotation

kegg
ID rcu:RCOM_0311070
description hypothetical protein
nr
ID XP_002534041.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T722
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0311070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_058095_010 0.0126390726 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
3 Hb_000284_090 0.0229887386 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_001825_030 0.0236301233 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
5 Hb_001147_120 0.0276000835 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
6 Hb_000099_180 0.0409149111 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
7 Hb_028390_020 0.0450610928 - - -
8 Hb_000321_020 0.0478714619 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
9 Hb_002304_120 0.0539836713 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000327_050 0.0613097436 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
11 Hb_003059_060 0.0617815557 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
12 Hb_004148_030 0.0669626571 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
13 Hb_000061_080 0.0675439246 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
14 Hb_013399_040 0.0678284359 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
15 Hb_000056_180 0.0715790099 - - -
16 Hb_170674_020 0.0765464291 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_000318_070 0.0822882038 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
18 Hb_032280_010 0.0917060849 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_000172_260 0.0960227269 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
20 Hb_002217_480 0.0973988036 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]

Gene co-expression network

sample Hb_012760_080 Hb_012760_080 Hb_058095_010 Hb_058095_010 Hb_012760_080--Hb_058095_010 Hb_000284_090 Hb_000284_090 Hb_012760_080--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_012760_080--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_012760_080--Hb_001147_120 Hb_000099_180 Hb_000099_180 Hb_012760_080--Hb_000099_180 Hb_028390_020 Hb_028390_020 Hb_012760_080--Hb_028390_020 Hb_058095_010--Hb_000099_180 Hb_058095_010--Hb_028390_020 Hb_058095_010--Hb_000284_090 Hb_058095_010--Hb_001825_030 Hb_058095_010--Hb_001147_120 Hb_000284_090--Hb_001825_030 Hb_000284_090--Hb_001147_120 Hb_000321_020 Hb_000321_020 Hb_000284_090--Hb_000321_020 Hb_002304_120 Hb_002304_120 Hb_000284_090--Hb_002304_120 Hb_001825_030--Hb_001147_120 Hb_001825_030--Hb_000321_020 Hb_001825_030--Hb_002304_120 Hb_001147_120--Hb_000321_020 Hb_001147_120--Hb_002304_120 Hb_000327_050 Hb_000327_050 Hb_001147_120--Hb_000327_050 Hb_000099_180--Hb_028390_020 Hb_003059_060 Hb_003059_060 Hb_000099_180--Hb_003059_060 Hb_000061_080 Hb_000061_080 Hb_000099_180--Hb_000061_080 Hb_000056_180 Hb_000056_180 Hb_000099_180--Hb_000056_180 Hb_028390_020--Hb_003059_060 Hb_028390_020--Hb_000061_080 Hb_028390_020--Hb_000056_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0730269 0 0.305217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis