Hb_000061_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig61: 78536-80979
Sequence    

Annotation

kegg
ID tcc:TCM_014091
description Myb domain 16-like protein
nr
ID XP_012080553.1
description PREDICTED: transcription factor MYB28-like [Jatropha curcas]
swissprot
ID Q9SPG2
description Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1
trembl
ID A0A067KHI0
description MYB family protein OS=Jatropha curcas GN=JCGZ_11650 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb domain 16-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_080 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
2 Hb_000056_180 0.004046996 - - -
3 Hb_003059_060 0.005777267 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
4 Hb_028390_020 0.022526317 - - -
5 Hb_000099_180 0.0266760771 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
6 Hb_031022_040 0.0402779754 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
7 Hb_058095_010 0.0549361767 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
8 Hb_000903_050 0.0657565939 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
9 Hb_012760_080 0.0675439246 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005306_200 0.0685035834 - - -
11 Hb_005511_070 0.0729752201 - - -
12 Hb_000115_260 0.0745610321 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
13 Hb_000433_060 0.0838341136 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
14 Hb_000284_090 0.0904332033 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_001825_030 0.0910709814 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
16 Hb_001147_120 0.0950175696 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
17 Hb_000259_100 0.0965406066 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_000976_090 0.098543271 - - -
19 Hb_174644_010 0.1020704541 - - -
20 Hb_014214_010 0.108122715 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000061_080 Hb_000061_080 Hb_000056_180 Hb_000056_180 Hb_000061_080--Hb_000056_180 Hb_003059_060 Hb_003059_060 Hb_000061_080--Hb_003059_060 Hb_028390_020 Hb_028390_020 Hb_000061_080--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_000061_080--Hb_000099_180 Hb_031022_040 Hb_031022_040 Hb_000061_080--Hb_031022_040 Hb_058095_010 Hb_058095_010 Hb_000061_080--Hb_058095_010 Hb_000056_180--Hb_003059_060 Hb_000056_180--Hb_028390_020 Hb_000056_180--Hb_000099_180 Hb_000056_180--Hb_031022_040 Hb_000056_180--Hb_058095_010 Hb_003059_060--Hb_028390_020 Hb_003059_060--Hb_000099_180 Hb_003059_060--Hb_031022_040 Hb_003059_060--Hb_058095_010 Hb_028390_020--Hb_000099_180 Hb_028390_020--Hb_058095_010 Hb_012760_080 Hb_012760_080 Hb_028390_020--Hb_012760_080 Hb_000099_180--Hb_058095_010 Hb_000099_180--Hb_012760_080 Hb_000903_050 Hb_000903_050 Hb_031022_040--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_031022_040--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_031022_040--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_031022_040--Hb_000115_260 Hb_058095_010--Hb_012760_080 Hb_000284_090 Hb_000284_090 Hb_058095_010--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_058095_010--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_058095_010--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0129643 0 0.0369894 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis