Hb_000115_260

Information

Type transcription factor
Description TF Family: bHLH
Location Contig115: 276898-278389
Sequence    

Annotation

kegg
ID vvi:100264677
description transcription factor bHLH75
nr
ID XP_002279412.1
description PREDICTED: transcription factor bHLH75 [Vitis vinifera]
swissprot
ID A4D998
description Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1
trembl
ID F6HFN6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03720 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor bhlh75-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_260 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
2 Hb_005511_070 0.0015897984 - - -
3 Hb_005306_200 0.006071813 - - -
4 Hb_000903_050 0.0088245401 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
5 Hb_000259_100 0.0220508534 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_031022_040 0.0343323976 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
7 Hb_022264_010 0.065512734 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
8 Hb_000056_180 0.0705246787 - - -
9 Hb_000061_080 0.0745610321 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
10 Hb_003059_060 0.0803207809 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
11 Hb_000433_060 0.0815399888 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_041849_010 0.0844426631 - - beta-glucosidase, putative [Ricinus communis]
13 Hb_014214_010 0.0930186767 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
14 Hb_064773_010 0.0967280856 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
15 Hb_028390_020 0.0970030685 - - -
16 Hb_000120_100 0.0997443059 - - -
17 Hb_000099_180 0.1011324917 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
18 Hb_004668_030 0.1063989103 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
19 Hb_020301_050 0.1069265757 - - conserved hypothetical protein [Ricinus communis]
20 Hb_078439_010 0.1101044141 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000115_260 Hb_000115_260 Hb_005511_070 Hb_005511_070 Hb_000115_260--Hb_005511_070 Hb_005306_200 Hb_005306_200 Hb_000115_260--Hb_005306_200 Hb_000903_050 Hb_000903_050 Hb_000115_260--Hb_000903_050 Hb_000259_100 Hb_000259_100 Hb_000115_260--Hb_000259_100 Hb_031022_040 Hb_031022_040 Hb_000115_260--Hb_031022_040 Hb_022264_010 Hb_022264_010 Hb_000115_260--Hb_022264_010 Hb_005511_070--Hb_005306_200 Hb_005511_070--Hb_000903_050 Hb_005511_070--Hb_000259_100 Hb_005511_070--Hb_031022_040 Hb_005511_070--Hb_022264_010 Hb_005306_200--Hb_000903_050 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_031022_040 Hb_000056_180 Hb_000056_180 Hb_005306_200--Hb_000056_180 Hb_000903_050--Hb_031022_040 Hb_000903_050--Hb_000259_100 Hb_000903_050--Hb_000056_180 Hb_000259_100--Hb_022264_010 Hb_000259_100--Hb_031022_040 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080 Hb_041849_010 Hb_041849_010 Hb_022264_010--Hb_041849_010 Hb_064773_010 Hb_064773_010 Hb_022264_010--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_022264_010--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_022264_010--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_022264_010--Hb_020301_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.494706 0 0.960861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis