Hb_022264_010

Information

Type -
Description -
Location Contig22264: 810-1379
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012480855.1
description PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008152
description ac099402_4 22 kda kafirin cluster ty3-gypsy type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022264_010 0.0 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
2 Hb_041849_010 0.0189695463 - - beta-glucosidase, putative [Ricinus communis]
3 Hb_064773_010 0.031289636 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
4 Hb_000120_100 0.0343154271 - - -
5 Hb_004668_030 0.0409926104 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
6 Hb_020301_050 0.0415221519 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000259_100 0.0434866665 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_078439_010 0.0447115547 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_000115_260 0.065512734 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
10 Hb_169511_020 0.067078145 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
11 Hb_005511_070 0.0670997223 - - -
12 Hb_003910_030 0.0713991445 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
13 Hb_005306_200 0.0715730564 - - -
14 Hb_000953_160 0.0718020598 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
15 Hb_061641_010 0.0733153124 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000903_050 0.0743198931 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
17 Hb_004077_010 0.0759648033 - - retinoblastoma-binding protein, putative [Ricinus communis]
18 Hb_103659_010 0.0768286047 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001975_060 0.0841895614 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
20 Hb_003453_070 0.0956527927 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]

Gene co-expression network

sample Hb_022264_010 Hb_022264_010 Hb_041849_010 Hb_041849_010 Hb_022264_010--Hb_041849_010 Hb_064773_010 Hb_064773_010 Hb_022264_010--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_022264_010--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_022264_010--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_022264_010--Hb_020301_050 Hb_000259_100 Hb_000259_100 Hb_022264_010--Hb_000259_100 Hb_041849_010--Hb_064773_010 Hb_041849_010--Hb_000120_100 Hb_041849_010--Hb_004668_030 Hb_041849_010--Hb_020301_050 Hb_078439_010 Hb_078439_010 Hb_041849_010--Hb_078439_010 Hb_064773_010--Hb_000120_100 Hb_064773_010--Hb_004668_030 Hb_064773_010--Hb_020301_050 Hb_064773_010--Hb_078439_010 Hb_000120_100--Hb_004668_030 Hb_000120_100--Hb_020301_050 Hb_000120_100--Hb_078439_010 Hb_169511_020 Hb_169511_020 Hb_000120_100--Hb_169511_020 Hb_004668_030--Hb_020301_050 Hb_004668_030--Hb_078439_010 Hb_004668_030--Hb_169511_020 Hb_020301_050--Hb_078439_010 Hb_020301_050--Hb_169511_020 Hb_000115_260 Hb_000115_260 Hb_000259_100--Hb_000115_260 Hb_005511_070 Hb_005511_070 Hb_000259_100--Hb_005511_070 Hb_005306_200 Hb_005306_200 Hb_000259_100--Hb_005306_200 Hb_000903_050 Hb_000903_050 Hb_000259_100--Hb_000903_050 Hb_031022_040 Hb_031022_040 Hb_000259_100--Hb_031022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0544387 0 0.0768657 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis