Hb_004668_030

Information

Type -
Description -
Location Contig4668: 18520-19412
Sequence    

Annotation

kegg
ID rcu:RCOM_0836430
description amino acid transporter, putative
nr
ID XP_012067644.1
description PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID B9S8W8
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0836430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_030 0.0 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
2 Hb_020301_050 0.0005298613 - - conserved hypothetical protein [Ricinus communis]
3 Hb_078439_010 0.0037213601 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_000120_100 0.0066805234 - - -
5 Hb_064773_010 0.0097074046 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
6 Hb_041849_010 0.0220291872 - - beta-glucosidase, putative [Ricinus communis]
7 Hb_169511_020 0.0261107957 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
8 Hb_003910_030 0.0304378426 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
9 Hb_000953_160 0.0308413486 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
10 Hb_061641_010 0.0323568608 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_004077_010 0.0350104632 - - retinoblastoma-binding protein, putative [Ricinus communis]
12 Hb_103659_010 0.0358756479 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022264_010 0.0409926104 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
14 Hb_001975_060 0.0432492436 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
15 Hb_003453_070 0.0547351902 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
16 Hb_005839_070 0.058944296 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
17 Hb_010374_010 0.0594330839 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_000770_020 0.066918132 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
19 Hb_011045_020 0.0680393199 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
20 Hb_000302_050 0.0691759883 - - -

Gene co-expression network

sample Hb_004668_030 Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_004668_030--Hb_020301_050 Hb_078439_010 Hb_078439_010 Hb_004668_030--Hb_078439_010 Hb_000120_100 Hb_000120_100 Hb_004668_030--Hb_000120_100 Hb_064773_010 Hb_064773_010 Hb_004668_030--Hb_064773_010 Hb_041849_010 Hb_041849_010 Hb_004668_030--Hb_041849_010 Hb_169511_020 Hb_169511_020 Hb_004668_030--Hb_169511_020 Hb_020301_050--Hb_078439_010 Hb_020301_050--Hb_000120_100 Hb_020301_050--Hb_064773_010 Hb_020301_050--Hb_041849_010 Hb_020301_050--Hb_169511_020 Hb_078439_010--Hb_000120_100 Hb_078439_010--Hb_064773_010 Hb_078439_010--Hb_169511_020 Hb_078439_010--Hb_041849_010 Hb_000120_100--Hb_064773_010 Hb_000120_100--Hb_041849_010 Hb_000120_100--Hb_169511_020 Hb_064773_010--Hb_041849_010 Hb_022264_010 Hb_022264_010 Hb_064773_010--Hb_022264_010 Hb_041849_010--Hb_022264_010 Hb_003910_030 Hb_003910_030 Hb_169511_020--Hb_003910_030 Hb_000953_160 Hb_000953_160 Hb_169511_020--Hb_000953_160 Hb_061641_010 Hb_061641_010 Hb_169511_020--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_169511_020--Hb_004077_010 Hb_103659_010 Hb_103659_010 Hb_169511_020--Hb_103659_010 Hb_001975_060 Hb_001975_060 Hb_169511_020--Hb_001975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0380246 0 0.0441928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis