Hb_004077_010

Information

Type -
Description -
Location Contig4077: 2759-4298
Sequence    

Annotation

kegg
ID rcu:RCOM_1389220
description retinoblastoma-binding protein, putative
nr
ID XP_002530663.1
description retinoblastoma-binding protein, putative [Ricinus communis]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID B9SXE4
description Retinoblastoma-binding protein, putative OS=Ricinus communis GN=RCOM_1389220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004077_010 0.0 - - retinoblastoma-binding protein, putative [Ricinus communis]
2 Hb_103659_010 0.0008655617 - - conserved hypothetical protein [Ricinus communis]
3 Hb_061641_010 0.0026546457 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000953_160 0.0041706771 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
5 Hb_003910_030 0.004574312 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
6 Hb_001975_060 0.0082431079 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
7 Hb_169511_020 0.0089024922 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
8 Hb_003453_070 0.0197378369 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
9 Hb_005839_070 0.0239509637 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
10 Hb_010374_010 0.0244402465 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_078439_010 0.0312905217 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_000770_020 0.0319336007 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
13 Hb_011045_020 0.0330561504 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
14 Hb_000302_050 0.034194231 - - -
15 Hb_020301_050 0.0344808246 - - conserved hypothetical protein [Ricinus communis]
16 Hb_126916_010 0.0348145743 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
17 Hb_004668_030 0.0350104632 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_006856_060 0.0379789803 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_000120_100 0.0416875884 - - -
20 Hb_064773_010 0.0447125689 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]

Gene co-expression network

sample Hb_004077_010 Hb_004077_010 Hb_103659_010 Hb_103659_010 Hb_004077_010--Hb_103659_010 Hb_061641_010 Hb_061641_010 Hb_004077_010--Hb_061641_010 Hb_000953_160 Hb_000953_160 Hb_004077_010--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_004077_010--Hb_003910_030 Hb_001975_060 Hb_001975_060 Hb_004077_010--Hb_001975_060 Hb_169511_020 Hb_169511_020 Hb_004077_010--Hb_169511_020 Hb_103659_010--Hb_061641_010 Hb_103659_010--Hb_000953_160 Hb_103659_010--Hb_003910_030 Hb_103659_010--Hb_001975_060 Hb_103659_010--Hb_169511_020 Hb_061641_010--Hb_000953_160 Hb_061641_010--Hb_003910_030 Hb_061641_010--Hb_169511_020 Hb_061641_010--Hb_001975_060 Hb_000953_160--Hb_003910_030 Hb_000953_160--Hb_169511_020 Hb_000953_160--Hb_001975_060 Hb_003910_030--Hb_169511_020 Hb_003910_030--Hb_001975_060 Hb_003453_070 Hb_003453_070 Hb_001975_060--Hb_003453_070 Hb_169511_020--Hb_001975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0450491 0 0.0443907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis