Hb_003453_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig3453: 78676-79530
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15710g
description hypothetical protein
nr
ID XP_012067386.1
description PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
swissprot
ID Q9M644
description Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1
trembl
ID A0A067L3S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26896 PE=4 SV=1
Gene Ontology
ID GO:0050789
description ethylene-responsive transcription factor lep-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_070 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
2 Hb_005839_070 0.0042138197 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
3 Hb_010374_010 0.0047031987 - - TMV resistance protein N, putative [Ricinus communis]
4 Hb_001975_060 0.0114953782 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
5 Hb_000770_020 0.0121984408 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
6 Hb_011045_020 0.0133213403 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
7 Hb_000302_050 0.0144597932 - - -
8 Hb_126916_010 0.0150803471 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
9 Hb_006856_060 0.0182459102 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_103659_010 0.018872387 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004077_010 0.0197378369 - - retinoblastoma-binding protein, putative [Ricinus communis]
12 Hb_061641_010 0.0223920756 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_000953_160 0.0239078313 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
14 Hb_003910_030 0.0243113876 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
15 Hb_005096_020 0.0274123664 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
16 Hb_169511_020 0.0286385841 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
17 Hb_000172_020 0.0302268614 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
18 Hb_135513_010 0.0403371669 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_110587_010 0.0438452893 - - unnamed protein product [Coffea canephora]
20 Hb_081287_010 0.0468898383 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003453_070 Hb_003453_070 Hb_005839_070 Hb_005839_070 Hb_003453_070--Hb_005839_070 Hb_010374_010 Hb_010374_010 Hb_003453_070--Hb_010374_010 Hb_001975_060 Hb_001975_060 Hb_003453_070--Hb_001975_060 Hb_000770_020 Hb_000770_020 Hb_003453_070--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_003453_070--Hb_011045_020 Hb_000302_050 Hb_000302_050 Hb_003453_070--Hb_000302_050 Hb_005839_070--Hb_010374_010 Hb_005839_070--Hb_000770_020 Hb_005839_070--Hb_011045_020 Hb_005839_070--Hb_000302_050 Hb_126916_010 Hb_126916_010 Hb_005839_070--Hb_126916_010 Hb_010374_010--Hb_000770_020 Hb_010374_010--Hb_011045_020 Hb_010374_010--Hb_000302_050 Hb_010374_010--Hb_126916_010 Hb_103659_010 Hb_103659_010 Hb_001975_060--Hb_103659_010 Hb_004077_010 Hb_004077_010 Hb_001975_060--Hb_004077_010 Hb_061641_010 Hb_061641_010 Hb_001975_060--Hb_061641_010 Hb_000953_160 Hb_000953_160 Hb_001975_060--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_001975_060--Hb_003910_030 Hb_000770_020--Hb_011045_020 Hb_000770_020--Hb_000302_050 Hb_000770_020--Hb_126916_010 Hb_006856_060 Hb_006856_060 Hb_000770_020--Hb_006856_060 Hb_011045_020--Hb_000302_050 Hb_011045_020--Hb_126916_010 Hb_011045_020--Hb_006856_060 Hb_000302_050--Hb_126916_010 Hb_000302_050--Hb_006856_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0271235 0 0.0243532 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis