Hb_001975_060

Information

Type -
Description -
Location Contig1975: 62856-66082
Sequence    

Annotation

kegg
ID rcu:RCOM_0784640
description serine-threonine protein kinase, plant-type, putative
nr
ID KDP34529.1
description hypothetical protein JCGZ_11079 [Jatropha curcas]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067KRS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11079 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_060 0.0 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
2 Hb_103659_010 0.0073775645 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004077_010 0.0082431079 - - retinoblastoma-binding protein, putative [Ricinus communis]
4 Hb_061641_010 0.0108976709 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_003453_070 0.0114953782 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
6 Hb_000953_160 0.0124136371 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
7 Hb_003910_030 0.0128172524 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
8 Hb_005839_070 0.015708933 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
9 Hb_010374_010 0.016198272 - - TMV resistance protein N, putative [Ricinus communis]
10 Hb_169511_020 0.017145164 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
11 Hb_000770_020 0.0236926608 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
12 Hb_011045_020 0.0248153934 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
13 Hb_000302_050 0.0259536668 - - -
14 Hb_126916_010 0.0265741185 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
15 Hb_006856_060 0.0297391114 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_005096_020 0.0389034584 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
17 Hb_078439_010 0.0395300951 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_000172_020 0.0417171684 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
19 Hb_020301_050 0.0427197228 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004668_030 0.0432492436 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001975_060 Hb_001975_060 Hb_103659_010 Hb_103659_010 Hb_001975_060--Hb_103659_010 Hb_004077_010 Hb_004077_010 Hb_001975_060--Hb_004077_010 Hb_061641_010 Hb_061641_010 Hb_001975_060--Hb_061641_010 Hb_003453_070 Hb_003453_070 Hb_001975_060--Hb_003453_070 Hb_000953_160 Hb_000953_160 Hb_001975_060--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_001975_060--Hb_003910_030 Hb_103659_010--Hb_004077_010 Hb_103659_010--Hb_061641_010 Hb_103659_010--Hb_000953_160 Hb_103659_010--Hb_003910_030 Hb_169511_020 Hb_169511_020 Hb_103659_010--Hb_169511_020 Hb_004077_010--Hb_061641_010 Hb_004077_010--Hb_000953_160 Hb_004077_010--Hb_003910_030 Hb_004077_010--Hb_169511_020 Hb_061641_010--Hb_000953_160 Hb_061641_010--Hb_003910_030 Hb_061641_010--Hb_169511_020 Hb_005839_070 Hb_005839_070 Hb_003453_070--Hb_005839_070 Hb_010374_010 Hb_010374_010 Hb_003453_070--Hb_010374_010 Hb_000770_020 Hb_000770_020 Hb_003453_070--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_003453_070--Hb_011045_020 Hb_000302_050 Hb_000302_050 Hb_003453_070--Hb_000302_050 Hb_000953_160--Hb_003910_030 Hb_000953_160--Hb_169511_020 Hb_003910_030--Hb_169511_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00998868 0 0.00946784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis