Hb_005839_070

Information

Type -
Description -
Location Contig5839: 58750-60810
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08160g
description hypothetical protein
nr
ID XP_006376031.1
description hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9N131
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_070 0.0 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
2 Hb_010374_010 0.0004893825 - - TMV resistance protein N, putative [Ricinus communis]
3 Hb_003453_070 0.0042138197 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
4 Hb_000770_020 0.0079847647 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
5 Hb_011045_020 0.0091076994 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
6 Hb_000302_050 0.0102461919 - - -
7 Hb_126916_010 0.010866769 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
8 Hb_006856_060 0.0140324683 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_001975_060 0.015708933 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
10 Hb_103659_010 0.0230855681 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005096_020 0.0231994871 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
12 Hb_004077_010 0.0239509637 - - retinoblastoma-binding protein, putative [Ricinus communis]
13 Hb_000172_020 0.0260142052 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
14 Hb_061641_010 0.0266050225 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_000953_160 0.0281206662 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
16 Hb_003910_030 0.0285241915 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
17 Hb_169511_020 0.0328510265 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
18 Hb_135513_010 0.0361255092 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_110587_010 0.0396340504 - - unnamed protein product [Coffea canephora]
20 Hb_081287_010 0.0426789932 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_070 Hb_005839_070 Hb_010374_010 Hb_010374_010 Hb_005839_070--Hb_010374_010 Hb_003453_070 Hb_003453_070 Hb_005839_070--Hb_003453_070 Hb_000770_020 Hb_000770_020 Hb_005839_070--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_005839_070--Hb_011045_020 Hb_000302_050 Hb_000302_050 Hb_005839_070--Hb_000302_050 Hb_126916_010 Hb_126916_010 Hb_005839_070--Hb_126916_010 Hb_010374_010--Hb_003453_070 Hb_010374_010--Hb_000770_020 Hb_010374_010--Hb_011045_020 Hb_010374_010--Hb_000302_050 Hb_010374_010--Hb_126916_010 Hb_001975_060 Hb_001975_060 Hb_003453_070--Hb_001975_060 Hb_003453_070--Hb_000770_020 Hb_003453_070--Hb_011045_020 Hb_003453_070--Hb_000302_050 Hb_000770_020--Hb_011045_020 Hb_000770_020--Hb_000302_050 Hb_000770_020--Hb_126916_010 Hb_006856_060 Hb_006856_060 Hb_000770_020--Hb_006856_060 Hb_011045_020--Hb_000302_050 Hb_011045_020--Hb_126916_010 Hb_011045_020--Hb_006856_060 Hb_000302_050--Hb_126916_010 Hb_000302_050--Hb_006856_060 Hb_126916_010--Hb_006856_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0104337 0 0.00918364 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis