Hb_003910_030

Information

Type -
Description -
Location Contig3910: 19622-20201
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11560g
description POPTRDRAFT_764596; hypothetical protein
nr
ID XP_011039225.1
description PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
swissprot
ID Q9SCS9
description RPW8-like protein 1 OS=Arabidopsis thaliana GN=HR1 PE=2 SV=1
trembl
ID B9HE85
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11560g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003910_030 0.0 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
2 Hb_000953_160 0.0004036376 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
3 Hb_061641_010 0.0019196744 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_169511_020 0.0043282413 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
5 Hb_004077_010 0.004574312 - - retinoblastoma-binding protein, putative [Ricinus communis]
6 Hb_103659_010 0.0054398663 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001975_060 0.0128172524 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
8 Hb_003453_070 0.0243113876 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
9 Hb_078439_010 0.0267175362 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_005839_070 0.0285241915 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
11 Hb_010374_010 0.0290134331 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_020301_050 0.0299081493 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004668_030 0.0304378426 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
14 Hb_000770_020 0.0365060615 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
15 Hb_000120_100 0.0371157335 - - -
16 Hb_011045_020 0.037628487 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
17 Hb_000302_050 0.0387664375 - - -
18 Hb_126916_010 0.0393867082 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
19 Hb_064773_010 0.040141108 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
20 Hb_006856_060 0.0425507245 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_003910_030 Hb_003910_030 Hb_000953_160 Hb_000953_160 Hb_003910_030--Hb_000953_160 Hb_061641_010 Hb_061641_010 Hb_003910_030--Hb_061641_010 Hb_169511_020 Hb_169511_020 Hb_003910_030--Hb_169511_020 Hb_004077_010 Hb_004077_010 Hb_003910_030--Hb_004077_010 Hb_103659_010 Hb_103659_010 Hb_003910_030--Hb_103659_010 Hb_001975_060 Hb_001975_060 Hb_003910_030--Hb_001975_060 Hb_000953_160--Hb_061641_010 Hb_000953_160--Hb_004077_010 Hb_000953_160--Hb_169511_020 Hb_000953_160--Hb_103659_010 Hb_000953_160--Hb_001975_060 Hb_061641_010--Hb_004077_010 Hb_061641_010--Hb_103659_010 Hb_061641_010--Hb_169511_020 Hb_061641_010--Hb_001975_060 Hb_169511_020--Hb_004077_010 Hb_169511_020--Hb_103659_010 Hb_169511_020--Hb_001975_060 Hb_004077_010--Hb_103659_010 Hb_004077_010--Hb_001975_060 Hb_103659_010--Hb_001975_060 Hb_003453_070 Hb_003453_070 Hb_001975_060--Hb_003453_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.77544 0 0.780747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis