Hb_000259_100

Information

Type -
Description -
Location Contig259: 176897-181330
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006597mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000259_100 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_000115_260 0.0220508534 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
3 Hb_005511_070 0.0236403056 - - -
4 Hb_005306_200 0.0281210873 - - -
5 Hb_000903_050 0.0308728674 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
6 Hb_022264_010 0.0434866665 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
7 Hb_031022_040 0.0563648635 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
8 Hb_041849_010 0.0624370287 - - beta-glucosidase, putative [Ricinus communis]
9 Hb_064773_010 0.0747386894 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
10 Hb_000120_100 0.0777592477 - - -
11 Hb_004668_030 0.0844239074 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
12 Hb_020301_050 0.0849523984 - - conserved hypothetical protein [Ricinus communis]
13 Hb_078439_010 0.0881352972 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_000056_180 0.0925112021 - - -
15 Hb_000433_060 0.0930280116 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
16 Hb_000061_080 0.0965406066 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
17 Hb_014214_010 0.0993339374 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
18 Hb_003059_060 0.1022897732 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_169511_020 0.1104478202 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
20 Hb_003910_030 0.1147566851 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]

Gene co-expression network

sample Hb_000259_100 Hb_000259_100 Hb_000115_260 Hb_000115_260 Hb_000259_100--Hb_000115_260 Hb_005511_070 Hb_005511_070 Hb_000259_100--Hb_005511_070 Hb_005306_200 Hb_005306_200 Hb_000259_100--Hb_005306_200 Hb_000903_050 Hb_000903_050 Hb_000259_100--Hb_000903_050 Hb_022264_010 Hb_022264_010 Hb_000259_100--Hb_022264_010 Hb_031022_040 Hb_031022_040 Hb_000259_100--Hb_031022_040 Hb_000115_260--Hb_005511_070 Hb_000115_260--Hb_005306_200 Hb_000115_260--Hb_000903_050 Hb_000115_260--Hb_031022_040 Hb_000115_260--Hb_022264_010 Hb_005511_070--Hb_005306_200 Hb_005511_070--Hb_000903_050 Hb_005511_070--Hb_031022_040 Hb_005511_070--Hb_022264_010 Hb_005306_200--Hb_000903_050 Hb_005306_200--Hb_031022_040 Hb_000056_180 Hb_000056_180 Hb_005306_200--Hb_000056_180 Hb_000903_050--Hb_031022_040 Hb_000903_050--Hb_000056_180 Hb_041849_010 Hb_041849_010 Hb_022264_010--Hb_041849_010 Hb_064773_010 Hb_064773_010 Hb_022264_010--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_022264_010--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_022264_010--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_022264_010--Hb_020301_050 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0237738 0 0.0414182 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis