Hb_031022_040

Information

Type -
Description -
Location Contig31022: 57945-59476
Sequence    

Annotation

kegg
ID bvg:104890706
description putative ribonuclease H protein At1g65750
nr
ID XP_010674584.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCJ8
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031022_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
2 Hb_000903_050 0.0255112946 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
3 Hb_005306_200 0.0282631971 - - -
4 Hb_005511_070 0.032743388 - - -
5 Hb_000115_260 0.0343323976 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
6 Hb_000056_180 0.0362340666 - - -
7 Hb_000061_080 0.0402779754 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
8 Hb_003059_060 0.0460495682 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
9 Hb_000259_100 0.0563648635 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_028390_020 0.0627734452 - - -
11 Hb_000099_180 0.0669148917 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
12 Hb_000433_060 0.0738107436 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
13 Hb_014214_010 0.0931662017 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
14 Hb_058095_010 0.0950949482 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
15 Hb_022264_010 0.0997523349 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
16 Hb_000976_090 0.1028191988 - - -
17 Hb_012760_080 0.1076529786 - - conserved hypothetical protein [Ricinus communis]
18 Hb_174644_010 0.1094703783 - - -
19 Hb_002053_070 0.1109616801 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
20 Hb_041849_010 0.1186351502 - - beta-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_031022_040 Hb_031022_040 Hb_000903_050 Hb_000903_050 Hb_031022_040--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_031022_040--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_031022_040--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_031022_040--Hb_000115_260 Hb_000056_180 Hb_000056_180 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080 Hb_000903_050--Hb_005306_200 Hb_000903_050--Hb_005511_070 Hb_000903_050--Hb_000115_260 Hb_000259_100 Hb_000259_100 Hb_000903_050--Hb_000259_100 Hb_000903_050--Hb_000056_180 Hb_005306_200--Hb_005511_070 Hb_005306_200--Hb_000115_260 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_000056_180 Hb_005511_070--Hb_000115_260 Hb_005511_070--Hb_000259_100 Hb_022264_010 Hb_022264_010 Hb_005511_070--Hb_022264_010 Hb_000115_260--Hb_000259_100 Hb_000115_260--Hb_022264_010 Hb_000056_180--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000056_180--Hb_003059_060 Hb_028390_020 Hb_028390_020 Hb_000056_180--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_000056_180--Hb_000099_180 Hb_058095_010 Hb_058095_010 Hb_000056_180--Hb_058095_010 Hb_000061_080--Hb_003059_060 Hb_000061_080--Hb_028390_020 Hb_000061_080--Hb_000099_180 Hb_000061_080--Hb_058095_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0386707 0 0.0893205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis