Hb_000099_180

Information

Type -
Description -
Location Contig99: 218978-219475
Sequence    

Annotation

kegg
ID ath:AT3G09510
description RNase H domain-containing protein
nr
ID XP_010463382.1
description PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
swissprot
ID -
description -
trembl
ID O65246
description F21E10.8 protein OS=Arabidopsis thaliana GN=F21E10.8 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_180 0.0 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
2 Hb_028390_020 0.0041512469 - - -
3 Hb_003059_060 0.0209006831 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
4 Hb_000061_080 0.0266760771 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
5 Hb_058095_010 0.02828605 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
6 Hb_000056_180 0.0307211719 - - -
7 Hb_012760_080 0.0409149111 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000284_090 0.0638591014 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_001825_030 0.0644987333 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
10 Hb_031022_040 0.0669148917 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_001147_120 0.0684571999 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
12 Hb_000321_020 0.088651875 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
13 Hb_000903_050 0.0923474341 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
14 Hb_002304_120 0.0947347441 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005306_200 0.0950885604 - - -
16 Hb_000433_060 0.0992287745 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
17 Hb_005511_070 0.099550296 - - -
18 Hb_000115_260 0.1011324917 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
19 Hb_004148_030 0.1015048406 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
20 Hb_000327_050 0.1020216428 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000099_180 Hb_000099_180 Hb_028390_020 Hb_028390_020 Hb_000099_180--Hb_028390_020 Hb_003059_060 Hb_003059_060 Hb_000099_180--Hb_003059_060 Hb_000061_080 Hb_000061_080 Hb_000099_180--Hb_000061_080 Hb_058095_010 Hb_058095_010 Hb_000099_180--Hb_058095_010 Hb_000056_180 Hb_000056_180 Hb_000099_180--Hb_000056_180 Hb_012760_080 Hb_012760_080 Hb_000099_180--Hb_012760_080 Hb_028390_020--Hb_003059_060 Hb_028390_020--Hb_000061_080 Hb_028390_020--Hb_000056_180 Hb_028390_020--Hb_058095_010 Hb_028390_020--Hb_012760_080 Hb_003059_060--Hb_000061_080 Hb_003059_060--Hb_000056_180 Hb_031022_040 Hb_031022_040 Hb_003059_060--Hb_031022_040 Hb_003059_060--Hb_058095_010 Hb_000061_080--Hb_000056_180 Hb_000061_080--Hb_031022_040 Hb_000061_080--Hb_058095_010 Hb_058095_010--Hb_012760_080 Hb_000284_090 Hb_000284_090 Hb_058095_010--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_058095_010--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_058095_010--Hb_001147_120 Hb_000056_180--Hb_031022_040 Hb_000056_180--Hb_058095_010 Hb_012760_080--Hb_000284_090 Hb_012760_080--Hb_001825_030 Hb_012760_080--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0598381 0 0.197555 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis