Hb_058095_010

Information

Type -
Description -
Location Contig58095: 3026-3208
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00460g
description POPTRDRAFT_756483; hypothetical protein
nr
ID XP_011002455.1
description PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GZ49
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s00460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058095_010 0.0 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
2 Hb_012760_080 0.0126390726 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000099_180 0.02828605 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
4 Hb_028390_020 0.0324348265 - - -
5 Hb_000284_090 0.03561974 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_001825_030 0.0362607405 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
7 Hb_001147_120 0.0402281215 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
8 Hb_003059_060 0.0491683709 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
9 Hb_000061_080 0.0549361767 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
10 Hb_000056_180 0.0589753399 - - -
11 Hb_000321_020 0.0604806869 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
12 Hb_002304_120 0.066585272 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000327_050 0.0739009436 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
14 Hb_004148_030 0.0770011865 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
15 Hb_013399_040 0.0804091836 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
16 Hb_170674_020 0.0891113654 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_000318_070 0.0948415389 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
18 Hb_031022_040 0.0950949482 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
19 Hb_032280_010 0.0966102937 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_000172_260 0.0985935751 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_058095_010 Hb_058095_010 Hb_012760_080 Hb_012760_080 Hb_058095_010--Hb_012760_080 Hb_000099_180 Hb_000099_180 Hb_058095_010--Hb_000099_180 Hb_028390_020 Hb_028390_020 Hb_058095_010--Hb_028390_020 Hb_000284_090 Hb_000284_090 Hb_058095_010--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_058095_010--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_058095_010--Hb_001147_120 Hb_012760_080--Hb_000284_090 Hb_012760_080--Hb_001825_030 Hb_012760_080--Hb_001147_120 Hb_012760_080--Hb_000099_180 Hb_012760_080--Hb_028390_020 Hb_000099_180--Hb_028390_020 Hb_003059_060 Hb_003059_060 Hb_000099_180--Hb_003059_060 Hb_000061_080 Hb_000061_080 Hb_000099_180--Hb_000061_080 Hb_000056_180 Hb_000056_180 Hb_000099_180--Hb_000056_180 Hb_028390_020--Hb_003059_060 Hb_028390_020--Hb_000061_080 Hb_028390_020--Hb_000056_180 Hb_000284_090--Hb_001825_030 Hb_000284_090--Hb_001147_120 Hb_000321_020 Hb_000321_020 Hb_000284_090--Hb_000321_020 Hb_002304_120 Hb_002304_120 Hb_000284_090--Hb_002304_120 Hb_001825_030--Hb_001147_120 Hb_001825_030--Hb_000321_020 Hb_001825_030--Hb_002304_120 Hb_001147_120--Hb_000321_020 Hb_001147_120--Hb_002304_120 Hb_000327_050 Hb_000327_050 Hb_001147_120--Hb_000327_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.61097 0 17.887 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis