Hb_001147_120

Information

Type -
Description -
Location Contig1147: 204091-204918
Sequence    

Annotation

kegg
ID rcu:RCOM_1045160
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID KDP31577.1
description hypothetical protein JCGZ_14802 [Jatropha curcas]
swissprot
ID B9SBV6
description Probable terpene synthase 3 OS=Ricinus communis GN=TPS3 PE=3 SV=1
trembl
ID A0A067K614
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14802 PE=4 SV=1
Gene Ontology
ID GO:0000287
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001147_120 0.0 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
2 Hb_001825_030 0.0039721377 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
3 Hb_000284_090 0.0046138026 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_000321_020 0.0202949744 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
5 Hb_002304_120 0.0264186329 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012760_080 0.0276000835 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000327_050 0.0337612455 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
8 Hb_058095_010 0.0402281215 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
9 Hb_013399_040 0.0402973366 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
10 Hb_170674_020 0.0490427149 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
11 Hb_004148_030 0.0492794599 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
12 Hb_000318_070 0.0548052014 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
13 Hb_000099_180 0.0684571999 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
14 Hb_001998_160 0.071129123 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
15 Hb_002217_480 0.0722375059 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
16 Hb_028390_020 0.0725941684 - - -
17 Hb_032280_010 0.08656031 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_003059_060 0.0892718988 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_009501_010 0.0913634087 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_041067_010 0.0938902983 - - hypothetical protein JCGZ_00780 [Jatropha curcas]

Gene co-expression network

sample Hb_001147_120 Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_001147_120--Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_001147_120--Hb_000284_090 Hb_000321_020 Hb_000321_020 Hb_001147_120--Hb_000321_020 Hb_002304_120 Hb_002304_120 Hb_001147_120--Hb_002304_120 Hb_012760_080 Hb_012760_080 Hb_001147_120--Hb_012760_080 Hb_000327_050 Hb_000327_050 Hb_001147_120--Hb_000327_050 Hb_001825_030--Hb_000284_090 Hb_001825_030--Hb_012760_080 Hb_001825_030--Hb_000321_020 Hb_001825_030--Hb_002304_120 Hb_058095_010 Hb_058095_010 Hb_001825_030--Hb_058095_010 Hb_000284_090--Hb_012760_080 Hb_000284_090--Hb_000321_020 Hb_000284_090--Hb_002304_120 Hb_000284_090--Hb_058095_010 Hb_000321_020--Hb_002304_120 Hb_000321_020--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_000321_020--Hb_013399_040 Hb_002304_120--Hb_000327_050 Hb_002304_120--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_002304_120--Hb_170674_020 Hb_000318_070 Hb_000318_070 Hb_002304_120--Hb_000318_070 Hb_012760_080--Hb_058095_010 Hb_000099_180 Hb_000099_180 Hb_012760_080--Hb_000099_180 Hb_028390_020 Hb_028390_020 Hb_012760_080--Hb_028390_020 Hb_000327_050--Hb_013399_040 Hb_000327_050--Hb_170674_020 Hb_000327_050--Hb_000318_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0338387 0 0.167491 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis