Hb_013399_040

Information

Type -
Description -
Location Contig13399: 27016-27465
Sequence    

Annotation

kegg
ID rcu:RCOM_0653430
description hypothetical protein
nr
ID KDP40714.1
description hypothetical protein JCGZ_24713 [Jatropha curcas]
swissprot
ID Q8L9T5
description RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2
trembl
ID A0A067L9H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24713 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_040 0.0 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
2 Hb_000327_050 0.0065453149 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
3 Hb_170674_020 0.0087639038 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
4 Hb_002304_120 0.0138937928 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000318_070 0.0145426394 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
6 Hb_000321_020 0.0200188537 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
7 Hb_001998_160 0.0309311882 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
8 Hb_001147_120 0.0402973366 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
9 Hb_002217_480 0.0409976584 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
10 Hb_001825_030 0.0442626824 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
11 Hb_000284_090 0.0449031463 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_004148_030 0.0464133639 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
13 Hb_009501_010 0.0512872805 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_012760_080 0.0678284359 - - conserved hypothetical protein [Ricinus communis]
15 Hb_041067_010 0.0783282413 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
16 Hb_058095_010 0.0804091836 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
17 Hb_125152_010 0.0891920613 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_000048_120 0.0905076664 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
19 Hb_032280_010 0.0941761957 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_000099_180 0.1085016846 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]

Gene co-expression network

sample Hb_013399_040 Hb_013399_040 Hb_000327_050 Hb_000327_050 Hb_013399_040--Hb_000327_050 Hb_170674_020 Hb_170674_020 Hb_013399_040--Hb_170674_020 Hb_002304_120 Hb_002304_120 Hb_013399_040--Hb_002304_120 Hb_000318_070 Hb_000318_070 Hb_013399_040--Hb_000318_070 Hb_000321_020 Hb_000321_020 Hb_013399_040--Hb_000321_020 Hb_001998_160 Hb_001998_160 Hb_013399_040--Hb_001998_160 Hb_000327_050--Hb_002304_120 Hb_000327_050--Hb_000321_020 Hb_000327_050--Hb_170674_020 Hb_000327_050--Hb_000318_070 Hb_001147_120 Hb_001147_120 Hb_000327_050--Hb_001147_120 Hb_170674_020--Hb_000318_070 Hb_170674_020--Hb_001998_160 Hb_170674_020--Hb_002304_120 Hb_170674_020--Hb_000321_020 Hb_002304_120--Hb_000321_020 Hb_002304_120--Hb_001147_120 Hb_002304_120--Hb_000318_070 Hb_000318_070--Hb_001998_160 Hb_000318_070--Hb_000321_020 Hb_000321_020--Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_000321_020--Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_000321_020--Hb_000284_090 Hb_009501_010 Hb_009501_010 Hb_001998_160--Hb_009501_010 Hb_002217_480 Hb_002217_480 Hb_001998_160--Hb_002217_480 Hb_001998_160--Hb_000327_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0590103 0 0.380967 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis