Hb_000321_020

Information

Type -
Description -
Location Contig321: 14561-15496
Sequence    

Annotation

kegg
ID bvg:104891638
description uncharacterized LOC104891638
nr
ID XP_010675656.1
description PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCK9
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33936: 13296-13990 , PASA_asmbl_33937: 14908-15203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_020 0.0 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
2 Hb_002304_120 0.0061268753 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000327_050 0.0134754483 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
4 Hb_013399_040 0.0200188537 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
5 Hb_001147_120 0.0202949744 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
6 Hb_001825_030 0.0242653095 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
7 Hb_000284_090 0.0249066306 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_170674_020 0.0287771151 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
9 Hb_000318_070 0.0345501107 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
10 Hb_004148_030 0.0434153728 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
11 Hb_012760_080 0.0478714619 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001998_160 0.0509130681 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
13 Hb_002217_480 0.0550899016 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
14 Hb_058095_010 0.0604806869 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
15 Hb_009501_010 0.0712164322 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_041067_010 0.0840497055 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
17 Hb_032280_010 0.0882199883 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_000099_180 0.088651875 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
19 Hb_028390_020 0.0927786831 - - -
20 Hb_000172_260 0.1009771122 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_020 Hb_000321_020 Hb_002304_120 Hb_002304_120 Hb_000321_020--Hb_002304_120 Hb_000327_050 Hb_000327_050 Hb_000321_020--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_000321_020--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_000321_020--Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_000321_020--Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_000321_020--Hb_000284_090 Hb_002304_120--Hb_000327_050 Hb_002304_120--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_002304_120--Hb_170674_020 Hb_002304_120--Hb_001147_120 Hb_000318_070 Hb_000318_070 Hb_002304_120--Hb_000318_070 Hb_000327_050--Hb_013399_040 Hb_000327_050--Hb_170674_020 Hb_000327_050--Hb_000318_070 Hb_000327_050--Hb_001147_120 Hb_013399_040--Hb_170674_020 Hb_013399_040--Hb_000318_070 Hb_001998_160 Hb_001998_160 Hb_013399_040--Hb_001998_160 Hb_001147_120--Hb_001825_030 Hb_001147_120--Hb_000284_090 Hb_012760_080 Hb_012760_080 Hb_001147_120--Hb_012760_080 Hb_001825_030--Hb_000284_090 Hb_001825_030--Hb_012760_080 Hb_001825_030--Hb_002304_120 Hb_058095_010 Hb_058095_010 Hb_001825_030--Hb_058095_010 Hb_000284_090--Hb_012760_080 Hb_000284_090--Hb_002304_120 Hb_000284_090--Hb_058095_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0623663 0 0.351783 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis