Hb_001998_160

Information

Type -
Description -
Location Contig1998: 190073-191682
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05910g
description POPTRDRAFT_1087966; origin recognition complex 1 family protein
nr
ID XP_011025523.1
description PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
swissprot
ID Q710E8
description Origin of replication complex subunit 1A OS=Arabidopsis thaliana GN=ORC1A PE=1 SV=1
trembl
ID B9HNV8
description Origin recognition complex 1 family protein OS=Populus trichocarpa GN=POPTR_0009s05910g PE=4 SV=2
Gene Ontology
ID GO:0005634
description origin recognition complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19998: 191529-191865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_160 0.0 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
2 Hb_000318_070 0.0163979069 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
3 Hb_009501_010 0.0204008441 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_170674_020 0.0221748099 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_013399_040 0.0309311882 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
6 Hb_002217_480 0.0340516413 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
7 Hb_000327_050 0.0374673325 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
8 Hb_002304_120 0.0448020871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000321_020 0.0509130681 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
10 Hb_125152_010 0.0585054742 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_000048_120 0.059831133 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
12 Hb_004148_030 0.0643481956 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
13 Hb_001147_120 0.071129123 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
14 Hb_001825_030 0.075079623 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
15 Hb_000284_090 0.0757176129 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_041067_010 0.0791546618 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
17 Hb_000629_140 0.0835579088 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
18 Hb_012760_080 0.0985412929 - - conserved hypothetical protein [Ricinus communis]
19 Hb_137821_010 0.0986275336 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
20 Hb_000527_090 0.1038883899 - - serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001998_160 Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_001998_160--Hb_000318_070 Hb_009501_010 Hb_009501_010 Hb_001998_160--Hb_009501_010 Hb_170674_020 Hb_170674_020 Hb_001998_160--Hb_170674_020 Hb_013399_040 Hb_013399_040 Hb_001998_160--Hb_013399_040 Hb_002217_480 Hb_002217_480 Hb_001998_160--Hb_002217_480 Hb_000327_050 Hb_000327_050 Hb_001998_160--Hb_000327_050 Hb_000318_070--Hb_170674_020 Hb_000318_070--Hb_013399_040 Hb_000318_070--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_000318_070--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_000318_070--Hb_000321_020 Hb_009501_010--Hb_000318_070 Hb_125152_010 Hb_125152_010 Hb_009501_010--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_009501_010--Hb_000048_120 Hb_009501_010--Hb_170674_020 Hb_009501_010--Hb_002217_480 Hb_170674_020--Hb_013399_040 Hb_170674_020--Hb_000327_050 Hb_170674_020--Hb_002304_120 Hb_170674_020--Hb_000321_020 Hb_013399_040--Hb_000327_050 Hb_013399_040--Hb_002304_120 Hb_013399_040--Hb_000321_020 Hb_002217_480--Hb_000318_070 Hb_002217_480--Hb_170674_020 Hb_002217_480--Hb_013399_040 Hb_004148_030 Hb_004148_030 Hb_002217_480--Hb_004148_030 Hb_000327_050--Hb_002304_120 Hb_000327_050--Hb_000321_020 Hb_001147_120 Hb_001147_120 Hb_000327_050--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421106 0 3.39733 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis