Hb_004148_030

Information

Type -
Description -
Location Contig4148: 23010-23276
Sequence    

Annotation

kegg
ID rcu:RCOM_1383570
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_012457015.1
description PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2UW94
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G215100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41086: 22738-23389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004148_030 0.0 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
2 Hb_002217_480 0.0422946222 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
3 Hb_002304_120 0.0433860412 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000321_020 0.0434153728 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
5 Hb_000327_050 0.0444763394 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
6 Hb_013399_040 0.0464133639 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
7 Hb_001147_120 0.0492794599 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
8 Hb_041067_010 0.0501229427 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
9 Hb_170674_020 0.0502362232 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
10 Hb_001825_030 0.0512925736 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
11 Hb_000284_090 0.0516389575 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_000318_070 0.0533948346 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
13 Hb_032280_010 0.0549272783 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_001998_160 0.0643481956 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
15 Hb_012760_080 0.0669626571 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000172_260 0.0730994599 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
17 Hb_058095_010 0.0770011865 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
18 Hb_009501_010 0.0805302563 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000164_250 0.0923813245 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
20 Hb_001053_100 0.0928411087 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_004148_030 Hb_004148_030 Hb_002217_480 Hb_002217_480 Hb_004148_030--Hb_002217_480 Hb_002304_120 Hb_002304_120 Hb_004148_030--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_004148_030--Hb_000321_020 Hb_000327_050 Hb_000327_050 Hb_004148_030--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_004148_030--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_004148_030--Hb_001147_120 Hb_001998_160 Hb_001998_160 Hb_002217_480--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_002217_480--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_002217_480--Hb_170674_020 Hb_002217_480--Hb_013399_040 Hb_009501_010 Hb_009501_010 Hb_002217_480--Hb_009501_010 Hb_002304_120--Hb_000321_020 Hb_002304_120--Hb_000327_050 Hb_002304_120--Hb_013399_040 Hb_002304_120--Hb_170674_020 Hb_002304_120--Hb_001147_120 Hb_002304_120--Hb_000318_070 Hb_000321_020--Hb_000327_050 Hb_000321_020--Hb_013399_040 Hb_000321_020--Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_000321_020--Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_000321_020--Hb_000284_090 Hb_000327_050--Hb_013399_040 Hb_000327_050--Hb_170674_020 Hb_000327_050--Hb_000318_070 Hb_000327_050--Hb_001147_120 Hb_013399_040--Hb_170674_020 Hb_013399_040--Hb_000318_070 Hb_013399_040--Hb_001998_160 Hb_001147_120--Hb_001825_030 Hb_001147_120--Hb_000284_090 Hb_012760_080 Hb_012760_080 Hb_001147_120--Hb_012760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.68509 0.195315 44.296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis