Hb_003059_060

Information

Type -
Description -
Location Contig3059: 145403-148877
Sequence    

Annotation

kegg
ID cic:CICLE_v100140161m
description hypothetical protein
nr
ID XP_006447780.1
description hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID V4UA41
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100140161mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32351: 147892-148378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003059_060 0.0 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
2 Hb_000061_080 0.005777267 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
3 Hb_000056_180 0.0098241352 - - -
4 Hb_028390_020 0.0167503099 - - -
5 Hb_000099_180 0.0209006831 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
6 Hb_031022_040 0.0460495682 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
7 Hb_058095_010 0.0491683709 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
8 Hb_012760_080 0.0617815557 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000903_050 0.0715199478 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
10 Hb_005306_200 0.0742658528 - - -
11 Hb_005511_070 0.0787356458 - - -
12 Hb_000115_260 0.0803207809 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
13 Hb_000284_090 0.084684259 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_001825_030 0.0853224804 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
15 Hb_000433_060 0.0867120039 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
16 Hb_001147_120 0.0892718988 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
17 Hb_000976_090 0.0992512866 - - -
18 Hb_174644_010 0.1022600121 - - -
19 Hb_000259_100 0.1022897732 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_000321_020 0.1094115225 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_003059_060 Hb_003059_060 Hb_000061_080 Hb_000061_080 Hb_003059_060--Hb_000061_080 Hb_000056_180 Hb_000056_180 Hb_003059_060--Hb_000056_180 Hb_028390_020 Hb_028390_020 Hb_003059_060--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_003059_060--Hb_000099_180 Hb_031022_040 Hb_031022_040 Hb_003059_060--Hb_031022_040 Hb_058095_010 Hb_058095_010 Hb_003059_060--Hb_058095_010 Hb_000061_080--Hb_000056_180 Hb_000061_080--Hb_028390_020 Hb_000061_080--Hb_000099_180 Hb_000061_080--Hb_031022_040 Hb_000061_080--Hb_058095_010 Hb_000056_180--Hb_028390_020 Hb_000056_180--Hb_000099_180 Hb_000056_180--Hb_031022_040 Hb_000056_180--Hb_058095_010 Hb_028390_020--Hb_000099_180 Hb_028390_020--Hb_058095_010 Hb_012760_080 Hb_012760_080 Hb_028390_020--Hb_012760_080 Hb_000099_180--Hb_058095_010 Hb_000099_180--Hb_012760_080 Hb_000903_050 Hb_000903_050 Hb_031022_040--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_031022_040--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_031022_040--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_031022_040--Hb_000115_260 Hb_058095_010--Hb_012760_080 Hb_000284_090 Hb_000284_090 Hb_058095_010--Hb_000284_090 Hb_001825_030 Hb_001825_030 Hb_058095_010--Hb_001825_030 Hb_001147_120 Hb_001147_120 Hb_058095_010--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0104921 0 0.030883 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis