Hb_005511_070

Information

Type -
Description -
Location Contig5511: 51542-53576
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_070 0.0 - - -
2 Hb_000115_260 0.0015897984 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
3 Hb_005306_200 0.0044820332 - - -
4 Hb_000903_050 0.0072347853 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
5 Hb_000259_100 0.0236403056 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_031022_040 0.032743388 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
7 Hb_022264_010 0.0670997223 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
8 Hb_000056_180 0.0689384264 - - -
9 Hb_000061_080 0.0729752201 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
10 Hb_003059_060 0.0787356458 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
11 Hb_000433_060 0.0808792727 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_041849_010 0.0860278881 - - beta-glucosidase, putative [Ricinus communis]
13 Hb_014214_010 0.0927476602 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
14 Hb_028390_020 0.0954202264 - - -
15 Hb_064773_010 0.0983119537 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
16 Hb_000099_180 0.099550296 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
17 Hb_000120_100 0.1013278158 - - -
18 Hb_004668_030 0.1079815955 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
19 Hb_020301_050 0.1085091935 - - conserved hypothetical protein [Ricinus communis]
20 Hb_078439_010 0.1116866196 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_005511_070 Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_005511_070--Hb_000115_260 Hb_005306_200 Hb_005306_200 Hb_005511_070--Hb_005306_200 Hb_000903_050 Hb_000903_050 Hb_005511_070--Hb_000903_050 Hb_000259_100 Hb_000259_100 Hb_005511_070--Hb_000259_100 Hb_031022_040 Hb_031022_040 Hb_005511_070--Hb_031022_040 Hb_022264_010 Hb_022264_010 Hb_005511_070--Hb_022264_010 Hb_000115_260--Hb_005306_200 Hb_000115_260--Hb_000903_050 Hb_000115_260--Hb_000259_100 Hb_000115_260--Hb_031022_040 Hb_000115_260--Hb_022264_010 Hb_005306_200--Hb_000903_050 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_031022_040 Hb_000056_180 Hb_000056_180 Hb_005306_200--Hb_000056_180 Hb_000903_050--Hb_031022_040 Hb_000903_050--Hb_000259_100 Hb_000903_050--Hb_000056_180 Hb_000259_100--Hb_022264_010 Hb_000259_100--Hb_031022_040 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080 Hb_041849_010 Hb_041849_010 Hb_022264_010--Hb_041849_010 Hb_064773_010 Hb_064773_010 Hb_022264_010--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_022264_010--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_022264_010--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_022264_010--Hb_020301_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.067981 0 0.133087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis