Hb_000903_050

Information

Type -
Description -
Location Contig903: 187308-190738
Sequence    

Annotation

kegg
ID pif:PITG_20621
description pirin-like protein
nr
ID EPN01401.1
description hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
swissprot
ID Q9XBR7
description Putative quercetin 2,3-dioxygenase ZMO1337 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO1337 PE=3 SV=1
trembl
ID D0P2E2
description Pirin-like protein OS=Phytophthora infestans (strain T30-4) GN=PITG_20621 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000903_050 0.0 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
2 Hb_005306_200 0.0027527908 - - -
3 Hb_005511_070 0.0072347853 - - -
4 Hb_000115_260 0.0088245401 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
5 Hb_031022_040 0.0255112946 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
6 Hb_000259_100 0.0308728674 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
7 Hb_000056_180 0.0617179037 - - -
8 Hb_000061_080 0.0657565939 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
9 Hb_003059_060 0.0715199478 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
10 Hb_022264_010 0.0743198931 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
11 Hb_000433_060 0.0782079065 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_028390_020 0.088214529 - - -
13 Hb_014214_010 0.091849328 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
14 Hb_000099_180 0.0923474341 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
15 Hb_041849_010 0.0932395308 - - beta-glucosidase, putative [Ricinus communis]
16 Hb_064773_010 0.1055170989 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
17 Hb_000120_100 0.1085312523 - - -
18 Hb_000976_090 0.1130335507 - - -
19 Hb_004668_030 0.1151811063 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
20 Hb_000373_110 0.115200522 - - Nodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000903_050 Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_000903_050--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_000903_050--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_000903_050--Hb_000115_260 Hb_031022_040 Hb_031022_040 Hb_000903_050--Hb_031022_040 Hb_000259_100 Hb_000259_100 Hb_000903_050--Hb_000259_100 Hb_000056_180 Hb_000056_180 Hb_000903_050--Hb_000056_180 Hb_005306_200--Hb_005511_070 Hb_005306_200--Hb_000115_260 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_031022_040 Hb_005306_200--Hb_000056_180 Hb_005511_070--Hb_000115_260 Hb_005511_070--Hb_000259_100 Hb_005511_070--Hb_031022_040 Hb_022264_010 Hb_022264_010 Hb_005511_070--Hb_022264_010 Hb_000115_260--Hb_000259_100 Hb_000115_260--Hb_031022_040 Hb_000115_260--Hb_022264_010 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080 Hb_000259_100--Hb_022264_010 Hb_000259_100--Hb_031022_040 Hb_000056_180--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000056_180--Hb_003059_060 Hb_028390_020 Hb_028390_020 Hb_000056_180--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_000056_180--Hb_000099_180 Hb_058095_010 Hb_058095_010 Hb_000056_180--Hb_058095_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0832358 0 0.168945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis