Hb_000629_140

Information

Type -
Description -
Location Contig629: 163117-164052
Sequence    

Annotation

kegg
ID sbi:SORBI_04g013083
description SORBIDRAFT_04g013083, Sb04g013083; hypothetical protein
nr
ID XP_002453750.1
description hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID C5Y0L7
description Putative uncharacterized protein Sb04g013083 OS=Sorghum bicolor GN=Sb04g013083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000629_140 0.0 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
2 Hb_000048_120 0.0239751014 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
3 Hb_125152_010 0.0253077714 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_005694_140 0.0513881881 - - protein with unknown function [Ricinus communis]
5 Hb_116486_010 0.0575403794 - - MADS-box transcription factor, partial [Sapria himalayana]
6 Hb_009501_010 0.0633570938 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_137821_010 0.0754834327 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
8 Hb_002105_070 0.0760892774 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000527_090 0.0818055522 - - serine carboxypeptidase, putative [Ricinus communis]
10 Hb_001998_160 0.0835579088 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
11 Hb_002217_480 0.096397071 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
12 Hb_000318_070 0.0997269193 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
13 Hb_003747_080 0.1044983379 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_170674_020 0.1054105449 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
15 Hb_002853_010 0.1074595956 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002820_100 0.1090575495 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
17 Hb_005463_120 0.1096743293 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_007441_320 0.1131399101 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
19 Hb_013399_040 0.1140141586 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
20 Hb_007472_060 0.114469361 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000629_140 Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_000629_140--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_000629_140--Hb_125152_010 Hb_005694_140 Hb_005694_140 Hb_000629_140--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_000629_140--Hb_116486_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_137821_010 Hb_137821_010 Hb_000629_140--Hb_137821_010 Hb_000048_120--Hb_125152_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_000048_120--Hb_137821_010 Hb_002217_480 Hb_002217_480 Hb_000048_120--Hb_002217_480 Hb_125152_010--Hb_009501_010 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_125152_010--Hb_137821_010 Hb_005694_140--Hb_116486_010 Hb_002105_070 Hb_002105_070 Hb_005694_140--Hb_002105_070 Hb_005694_140--Hb_000048_120 Hb_005694_140--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_005694_140--Hb_000027_020 Hb_116486_010--Hb_002105_070 Hb_116486_010--Hb_000048_120 Hb_116486_010--Hb_125152_010 Hb_116486_010--Hb_000027_020 Hb_009501_010--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_009501_010--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_009501_010--Hb_170674_020 Hb_009501_010--Hb_002217_480 Hb_003747_080 Hb_003747_080 Hb_137821_010--Hb_003747_080 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_000527_090 Hb_000527_090 Hb_137821_010--Hb_000527_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0575068 0 0.962961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis