Hb_005463_120

Information

Type -
Description -
Location Contig5463: 68842-70332
Sequence    

Annotation

kegg
ID rcu:RCOM_1612920
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002511762.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID Q39111
description Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=GA20OX2 PE=2 SV=1
trembl
ID B9RDH3
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_1612920 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20 oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48013: 69010-69261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_120 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_137821_010 0.056857087 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
3 Hb_003747_080 0.0794037653 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_041067_010 0.086278054 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
5 Hb_000527_090 0.0863998032 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_002217_480 0.0957692096 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
7 Hb_015085_010 0.0993610383 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
8 Hb_181191_010 0.102325718 - - kinase, putative [Ricinus communis]
9 Hb_125152_010 0.1026409869 - - Ankyrin repeat family protein, putative [Theobroma cacao]
10 Hb_000048_120 0.1028706959 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
11 Hb_009501_010 0.1033368425 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_002820_100 0.1033657874 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
13 Hb_000203_110 0.1034317457 - - -
14 Hb_001053_100 0.1037519522 - - DNA-damage-inducible protein f, putative [Ricinus communis]
15 Hb_006052_080 0.107303851 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
16 Hb_006452_080 0.1083562674 - - Nodulin, putative [Ricinus communis]
17 Hb_007472_060 0.1084939843 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
18 Hb_001998_160 0.1092496309 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
19 Hb_000629_140 0.1096743293 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
20 Hb_103931_010 0.1144440373 - - -

Gene co-expression network

sample Hb_005463_120 Hb_005463_120 Hb_137821_010 Hb_137821_010 Hb_005463_120--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_005463_120--Hb_003747_080 Hb_041067_010 Hb_041067_010 Hb_005463_120--Hb_041067_010 Hb_000527_090 Hb_000527_090 Hb_005463_120--Hb_000527_090 Hb_002217_480 Hb_002217_480 Hb_005463_120--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_005463_120--Hb_015085_010 Hb_137821_010--Hb_003747_080 Hb_137821_010--Hb_000527_090 Hb_000048_120 Hb_000048_120 Hb_137821_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_137821_010--Hb_125152_010 Hb_000629_140 Hb_000629_140 Hb_137821_010--Hb_000629_140 Hb_000203_110 Hb_000203_110 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_004148_030 Hb_004148_030 Hb_041067_010--Hb_004148_030 Hb_032280_010 Hb_032280_010 Hb_041067_010--Hb_032280_010 Hb_041067_010--Hb_002217_480 Hb_041067_010--Hb_015085_010 Hb_000164_250 Hb_000164_250 Hb_041067_010--Hb_000164_250 Hb_000172_260 Hb_000172_260 Hb_041067_010--Hb_000172_260 Hb_006452_080 Hb_006452_080 Hb_000527_090--Hb_006452_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000527_090--Hb_000048_120 Hb_001998_160 Hb_001998_160 Hb_002217_480--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_002217_480--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_002217_480--Hb_170674_020 Hb_013399_040 Hb_013399_040 Hb_002217_480--Hb_013399_040 Hb_002217_480--Hb_004148_030 Hb_009501_010 Hb_009501_010 Hb_002217_480--Hb_009501_010 Hb_103931_010 Hb_103931_010 Hb_015085_010--Hb_103931_010 Hb_001053_100 Hb_001053_100 Hb_015085_010--Hb_001053_100 Hb_015085_010--Hb_032280_010 Hb_015085_010--Hb_000164_250 Hb_015085_010--Hb_003747_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182177 0.0280212 2.04943 0.0182968 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis