Hb_001053_100

Information

Type -
Description -
Location Contig1053: 78653-81671
Sequence    

Annotation

kegg
ID rcu:RCOM_0492910
description DNA-damage-inducible protein f, putative
nr
ID XP_002532163.1
description DNA-damage-inducible protein f, putative [Ricinus communis]
swissprot
ID Q9SFB0
description MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1
trembl
ID B9T1P4
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0492910 PE=3 SV=1
Gene Ontology
ID GO:0005623
description mate efflux family protein frd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01787: 81637-87127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_100 0.0 - - DNA-damage-inducible protein f, putative [Ricinus communis]
2 Hb_000086_160 0.0646472615 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
3 Hb_103931_010 0.074472512 - - -
4 Hb_041067_010 0.0756116785 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
5 Hb_015085_010 0.0819571792 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
6 Hb_001396_080 0.0829195876 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005183_020 0.0837615746 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
8 Hb_032280_010 0.0912348198 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
9 Hb_004148_030 0.0928411087 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
10 Hb_002217_480 0.0942617071 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
11 Hb_000172_260 0.0976154198 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
12 Hb_002025_190 0.0990697652 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
13 Hb_000027_010 0.1009033993 - - -
14 Hb_001269_440 0.1027643372 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
15 Hb_000164_250 0.1035727206 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
16 Hb_005463_120 0.1037519522 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_000527_090 0.1049845673 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_000628_100 0.1058838034 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
19 Hb_137821_010 0.1083146704 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
20 Hb_000318_070 0.11068895 - - PREDICTED: peroxidase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_001053_100 Hb_001053_100 Hb_000086_160 Hb_000086_160 Hb_001053_100--Hb_000086_160 Hb_103931_010 Hb_103931_010 Hb_001053_100--Hb_103931_010 Hb_041067_010 Hb_041067_010 Hb_001053_100--Hb_041067_010 Hb_015085_010 Hb_015085_010 Hb_001053_100--Hb_015085_010 Hb_001396_080 Hb_001396_080 Hb_001053_100--Hb_001396_080 Hb_005183_020 Hb_005183_020 Hb_001053_100--Hb_005183_020 Hb_001269_440 Hb_001269_440 Hb_000086_160--Hb_001269_440 Hb_000086_160--Hb_103931_010 Hb_000086_160--Hb_001396_080 Hb_000027_010 Hb_000027_010 Hb_000086_160--Hb_000027_010 Hb_003212_030 Hb_003212_030 Hb_000086_160--Hb_003212_030 Hb_103931_010--Hb_015085_010 Hb_000164_250 Hb_000164_250 Hb_103931_010--Hb_000164_250 Hb_103931_010--Hb_041067_010 Hb_032280_010 Hb_032280_010 Hb_103931_010--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_103931_010--Hb_000172_260 Hb_004148_030 Hb_004148_030 Hb_041067_010--Hb_004148_030 Hb_041067_010--Hb_032280_010 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_041067_010--Hb_015085_010 Hb_041067_010--Hb_000164_250 Hb_041067_010--Hb_000172_260 Hb_015085_010--Hb_032280_010 Hb_015085_010--Hb_000164_250 Hb_003747_080 Hb_003747_080 Hb_015085_010--Hb_003747_080 Hb_001396_080--Hb_041067_010 Hb_001396_080--Hb_005183_020 Hb_000527_090 Hb_000527_090 Hb_001396_080--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_001396_080--Hb_006452_080 Hb_005183_020--Hb_001269_440 Hb_005183_020--Hb_015085_010 Hb_005183_020--Hb_000086_160 Hb_000032_160 Hb_000032_160 Hb_005183_020--Hb_000032_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126673 1.44546 0.155862 10.3019 0.0118619 0.0236495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0226889 0 0.0180965 0.0475989

CAGE analysis