Hb_000032_160

Information

Type -
Description -
Location Contig32: 128975-129656
Sequence    

Annotation

kegg
ID rcu:RCOM_1691450
description hypothetical protein
nr
ID XP_002509943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33700: 129192-129615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005183_020 0.1026911283 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
3 Hb_013399_040 0.1271133422 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
4 Hb_170674_020 0.1271497145 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_000327_050 0.1274733562 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
6 Hb_000318_070 0.1274984279 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
7 Hb_001269_440 0.1276298154 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
8 Hb_002304_120 0.1282682125 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000321_020 0.1292411349 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
10 Hb_001998_160 0.1298671344 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
11 Hb_001396_080 0.1299345418 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002217_480 0.1327521197 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
13 Hb_001147_120 0.1343822546 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
14 Hb_001053_100 0.1347513934 - - DNA-damage-inducible protein f, putative [Ricinus communis]
15 Hb_009501_010 0.1354998623 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_004148_030 0.1356108525 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
17 Hb_001825_030 0.1357128801 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
18 Hb_000284_090 0.1359372218 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_003090_250 0.1427527036 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
20 Hb_024066_030 0.1428216216 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_000032_160 Hb_000032_160 Hb_005183_020 Hb_005183_020 Hb_000032_160--Hb_005183_020 Hb_013399_040 Hb_013399_040 Hb_000032_160--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_000032_160--Hb_170674_020 Hb_000327_050 Hb_000327_050 Hb_000032_160--Hb_000327_050 Hb_000318_070 Hb_000318_070 Hb_000032_160--Hb_000318_070 Hb_001269_440 Hb_001269_440 Hb_000032_160--Hb_001269_440 Hb_001053_100 Hb_001053_100 Hb_005183_020--Hb_001053_100 Hb_005183_020--Hb_001269_440 Hb_001396_080 Hb_001396_080 Hb_005183_020--Hb_001396_080 Hb_015085_010 Hb_015085_010 Hb_005183_020--Hb_015085_010 Hb_000086_160 Hb_000086_160 Hb_005183_020--Hb_000086_160 Hb_013399_040--Hb_000327_050 Hb_013399_040--Hb_170674_020 Hb_002304_120 Hb_002304_120 Hb_013399_040--Hb_002304_120 Hb_013399_040--Hb_000318_070 Hb_000321_020 Hb_000321_020 Hb_013399_040--Hb_000321_020 Hb_001998_160 Hb_001998_160 Hb_013399_040--Hb_001998_160 Hb_170674_020--Hb_000318_070 Hb_170674_020--Hb_000327_050 Hb_170674_020--Hb_001998_160 Hb_170674_020--Hb_002304_120 Hb_170674_020--Hb_000321_020 Hb_000327_050--Hb_002304_120 Hb_000327_050--Hb_000321_020 Hb_000327_050--Hb_000318_070 Hb_001147_120 Hb_001147_120 Hb_000327_050--Hb_001147_120 Hb_000318_070--Hb_001998_160 Hb_000318_070--Hb_002304_120 Hb_000318_070--Hb_000321_020 Hb_002837_150 Hb_002837_150 Hb_001269_440--Hb_002837_150 Hb_001269_440--Hb_000086_160 Hb_002025_190 Hb_002025_190 Hb_001269_440--Hb_002025_190 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_003212_030 Hb_003212_030 Hb_001269_440--Hb_003212_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.30305 0 8.6401 0 0.0436002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0 0 0 0.170526

CAGE analysis