Hb_003212_030

Information

Type -
Description -
Location Contig3212: 42228-43923
Sequence    

Annotation

kegg
ID rcu:RCOM_1584350
description multidrug resistance pump, putative
nr
ID XP_002510003.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q5RFD2
description Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1
trembl
ID B9R6R0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1584350 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33979: 42982-43550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003212_030 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_005373_030 0.0860600737 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002837_150 0.0964283103 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
4 Hb_000086_160 0.0982184184 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
5 Hb_001269_440 0.1005086211 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
6 Hb_004617_010 0.108874136 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
7 Hb_001013_070 0.1142178828 - - -
8 Hb_116679_010 0.1144837147 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
9 Hb_000358_070 0.1155865586 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
10 Hb_007472_060 0.1160107353 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
11 Hb_000025_150 0.1199113423 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
12 Hb_159791_010 0.1261091185 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
13 Hb_000027_010 0.1267129347 - - -
14 Hb_011689_090 0.1285115508 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
15 Hb_005245_030 0.1293705897 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
16 Hb_103632_010 0.1315258967 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_003607_040 0.1334012697 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_002999_010 0.13362114 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
19 Hb_003090_250 0.1341438077 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000816_170 0.1342354593 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_003212_030 Hb_003212_030 Hb_005373_030 Hb_005373_030 Hb_003212_030--Hb_005373_030 Hb_002837_150 Hb_002837_150 Hb_003212_030--Hb_002837_150 Hb_000086_160 Hb_000086_160 Hb_003212_030--Hb_000086_160 Hb_001269_440 Hb_001269_440 Hb_003212_030--Hb_001269_440 Hb_004617_010 Hb_004617_010 Hb_003212_030--Hb_004617_010 Hb_001013_070 Hb_001013_070 Hb_003212_030--Hb_001013_070 Hb_005373_030--Hb_001013_070 Hb_002999_010 Hb_002999_010 Hb_005373_030--Hb_002999_010 Hb_033153_030 Hb_033153_030 Hb_005373_030--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_005373_030--Hb_000445_480 Hb_007477_020 Hb_007477_020 Hb_005373_030--Hb_007477_020 Hb_103632_010 Hb_103632_010 Hb_002837_150--Hb_103632_010 Hb_001141_010 Hb_001141_010 Hb_002837_150--Hb_001141_010 Hb_002837_150--Hb_001269_440 Hb_002837_150--Hb_004617_010 Hb_002835_120 Hb_002835_120 Hb_002837_150--Hb_002835_120 Hb_001053_100 Hb_001053_100 Hb_000086_160--Hb_001053_100 Hb_000086_160--Hb_001269_440 Hb_103931_010 Hb_103931_010 Hb_000086_160--Hb_103931_010 Hb_001396_080 Hb_001396_080 Hb_000086_160--Hb_001396_080 Hb_000027_010 Hb_000027_010 Hb_000086_160--Hb_000027_010 Hb_002025_190 Hb_002025_190 Hb_001269_440--Hb_002025_190 Hb_005183_020 Hb_005183_020 Hb_001269_440--Hb_005183_020 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_011344_050 Hb_011344_050 Hb_004617_010--Hb_011344_050 Hb_159791_010 Hb_159791_010 Hb_004617_010--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_004617_010--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_004617_010--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_004617_010--Hb_145975_010 Hb_003582_010 Hb_003582_010 Hb_001013_070--Hb_003582_010 Hb_001013_070--Hb_033153_030 Hb_050229_030 Hb_050229_030 Hb_001013_070--Hb_050229_030 Hb_001013_070--Hb_000445_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.396917 0.0591869 3.62674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0233336 0 0.121007 0.0978091

CAGE analysis