Hb_002999_010

Information

Type -
Description -
Location Contig2999: 12894-14584
Sequence    

Annotation

kegg
ID vvi:100266770
description extracellular ribonuclease LE-like
nr
ID XP_010656419.1
description PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
swissprot
ID Q7M329
description Ribonuclease T2 OS=Sus scrofa GN=RNASET2 PE=1 SV=1
trembl
ID D7TAC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01250 PE=3 SV=1
Gene Ontology
ID GO:0005576
description ribonuclease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31335: 12935-14636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_010 0.0 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
2 Hb_005373_030 0.0799125713 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000480_050 0.0839095841 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
4 Hb_016120_030 0.0932964682 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
5 Hb_004926_010 0.0985059913 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
6 Hb_007477_020 0.1007399619 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
7 Hb_004031_060 0.1073059021 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
8 Hb_005245_030 0.1152543809 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
9 Hb_001013_070 0.1211723729 - - -
10 Hb_140024_010 0.123520703 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
11 Hb_159012_010 0.1247101718 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
12 Hb_033153_030 0.1297416936 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
13 Hb_003212_030 0.13362114 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_000194_030 0.1344690066 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
15 Hb_001529_010 0.1348758791 - - -
16 Hb_000445_480 0.1535452366 - - cytochrome P450, putative [Ricinus communis]
17 Hb_003058_090 0.1541047563 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
18 Hb_002874_100 0.1565471402 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000563_620 0.1568888173 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
20 Hb_000959_200 0.1569355881 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_010 Hb_002999_010 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_000480_050 Hb_000480_050 Hb_002999_010--Hb_000480_050 Hb_016120_030 Hb_016120_030 Hb_002999_010--Hb_016120_030 Hb_004926_010 Hb_004926_010 Hb_002999_010--Hb_004926_010 Hb_007477_020 Hb_007477_020 Hb_002999_010--Hb_007477_020 Hb_004031_060 Hb_004031_060 Hb_002999_010--Hb_004031_060 Hb_001013_070 Hb_001013_070 Hb_005373_030--Hb_001013_070 Hb_003212_030 Hb_003212_030 Hb_005373_030--Hb_003212_030 Hb_033153_030 Hb_033153_030 Hb_005373_030--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_005373_030--Hb_000445_480 Hb_005373_030--Hb_007477_020 Hb_000480_050--Hb_004926_010 Hb_159012_010 Hb_159012_010 Hb_000480_050--Hb_159012_010 Hb_000480_050--Hb_007477_020 Hb_000194_030 Hb_000194_030 Hb_000480_050--Hb_000194_030 Hb_000480_050--Hb_004031_060 Hb_016120_030--Hb_004031_060 Hb_140024_010 Hb_140024_010 Hb_016120_030--Hb_140024_010 Hb_019053_050 Hb_019053_050 Hb_016120_030--Hb_019053_050 Hb_005245_030 Hb_005245_030 Hb_016120_030--Hb_005245_030 Hb_016120_030--Hb_004926_010 Hb_004926_010--Hb_000194_030 Hb_004926_010--Hb_159012_010 Hb_004926_010--Hb_004031_060 Hb_007426_100 Hb_007426_100 Hb_004926_010--Hb_007426_100 Hb_003058_090 Hb_003058_090 Hb_007477_020--Hb_003058_090 Hb_007477_020--Hb_033153_030 Hb_002874_100 Hb_002874_100 Hb_007477_020--Hb_002874_100 Hb_004031_060--Hb_019053_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.41498 0.417069 32.893 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0540495 0 3.65526 0.433384

CAGE analysis