Hb_033153_030

Information

Type -
Description -
Location Contig33153: 25843-26670
Sequence    

Annotation

kegg
ID tcc:TCM_029791
description hypothetical protein
nr
ID XP_012092414.1
description PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GM24
description Uncharacterized protein OS=Theobroma cacao GN=TCM_029791 PE=4 SV=1
Gene Ontology
ID GO:0008171
description PREDICTED: uncharacterized protein LOC105650145

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_030 0.0 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
2 Hb_000445_480 0.0320533063 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001529_010 0.0565078816 - - -
4 Hb_002874_100 0.0642399564 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007426_100 0.0692262299 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002894_020 0.0872212866 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
7 Hb_005373_030 0.0875543315 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000363_100 0.0887715042 - - -
9 Hb_001104_290 0.0922741058 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
10 Hb_000194_030 0.0951186019 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
11 Hb_007477_020 0.0962073582 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
12 Hb_001013_070 0.1165376633 - - -
13 Hb_003058_090 0.1176919813 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
14 Hb_000480_050 0.1200372437 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
15 Hb_004926_010 0.1230028437 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
16 Hb_002999_010 0.1297416936 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
17 Hb_002511_050 0.1299633615 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000027_010 0.1308130283 - - -
19 Hb_159012_010 0.1327181865 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
20 Hb_004319_100 0.1332410493 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_033153_030 Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_033153_030--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_033153_030--Hb_001529_010 Hb_002874_100 Hb_002874_100 Hb_033153_030--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_033153_030--Hb_007426_100 Hb_002894_020 Hb_002894_020 Hb_033153_030--Hb_002894_020 Hb_005373_030 Hb_005373_030 Hb_033153_030--Hb_005373_030 Hb_000445_480--Hb_002894_020 Hb_000445_480--Hb_001529_010 Hb_000445_480--Hb_002874_100 Hb_000445_480--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_000445_480--Hb_000363_100 Hb_000194_030 Hb_000194_030 Hb_001529_010--Hb_000194_030 Hb_001529_010--Hb_007426_100 Hb_004319_100 Hb_004319_100 Hb_001529_010--Hb_004319_100 Hb_001529_010--Hb_002894_020 Hb_002874_100--Hb_007426_100 Hb_002874_100--Hb_000363_100 Hb_001104_290 Hb_001104_290 Hb_002874_100--Hb_001104_290 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_007426_100--Hb_000194_030 Hb_007426_100--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_002894_020--Hb_000224_020 Hb_002894_020--Hb_002874_100 Hb_002894_020--Hb_000363_100 Hb_001013_070 Hb_001013_070 Hb_005373_030--Hb_001013_070 Hb_002999_010 Hb_002999_010 Hb_005373_030--Hb_002999_010 Hb_003212_030 Hb_003212_030 Hb_005373_030--Hb_003212_030 Hb_005373_030--Hb_000445_480 Hb_007477_020 Hb_007477_020 Hb_005373_030--Hb_007477_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113623 0.0514668 1.25623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0709492 0

CAGE analysis