Hb_005373_030

Information

Type -
Description -
Location Contig5373: 42356-43328
Sequence    

Annotation

kegg
ID rcu:RCOM_0485560
description hypothetical protein
nr
ID XP_002524169.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0485560 PE=4 SV=1
Gene Ontology
ID GO:0006811
description melanoma inhibitory activity protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005373_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001013_070 0.0780930797 - - -
3 Hb_002999_010 0.0799125713 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
4 Hb_003212_030 0.0860600737 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_033153_030 0.0875543315 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
6 Hb_000445_480 0.1006346341 - - cytochrome P450, putative [Ricinus communis]
7 Hb_007477_020 0.1082267298 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
8 Hb_001529_010 0.1099810538 - - -
9 Hb_005245_030 0.1126532236 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
10 Hb_000480_050 0.1150317526 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
11 Hb_002874_100 0.1159999071 - - cytochrome P450, putative [Ricinus communis]
12 Hb_004926_010 0.1192402525 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
13 Hb_000363_100 0.1281351814 - - -
14 Hb_001104_290 0.1294459279 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
15 Hb_116679_010 0.1294537346 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
16 Hb_007426_100 0.1307443782 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002837_150 0.1324791614 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
18 Hb_000027_010 0.1336447858 - - -
19 Hb_016120_030 0.1336785666 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
20 Hb_007472_060 0.1338045535 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005373_030 Hb_005373_030 Hb_001013_070 Hb_001013_070 Hb_005373_030--Hb_001013_070 Hb_002999_010 Hb_002999_010 Hb_005373_030--Hb_002999_010 Hb_003212_030 Hb_003212_030 Hb_005373_030--Hb_003212_030 Hb_033153_030 Hb_033153_030 Hb_005373_030--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_005373_030--Hb_000445_480 Hb_007477_020 Hb_007477_020 Hb_005373_030--Hb_007477_020 Hb_003582_010 Hb_003582_010 Hb_001013_070--Hb_003582_010 Hb_001013_070--Hb_003212_030 Hb_001013_070--Hb_033153_030 Hb_050229_030 Hb_050229_030 Hb_001013_070--Hb_050229_030 Hb_001013_070--Hb_000445_480 Hb_000480_050 Hb_000480_050 Hb_002999_010--Hb_000480_050 Hb_016120_030 Hb_016120_030 Hb_002999_010--Hb_016120_030 Hb_004926_010 Hb_004926_010 Hb_002999_010--Hb_004926_010 Hb_002999_010--Hb_007477_020 Hb_004031_060 Hb_004031_060 Hb_002999_010--Hb_004031_060 Hb_002837_150 Hb_002837_150 Hb_003212_030--Hb_002837_150 Hb_000086_160 Hb_000086_160 Hb_003212_030--Hb_000086_160 Hb_001269_440 Hb_001269_440 Hb_003212_030--Hb_001269_440 Hb_004617_010 Hb_004617_010 Hb_003212_030--Hb_004617_010 Hb_033153_030--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_033153_030--Hb_001529_010 Hb_002874_100 Hb_002874_100 Hb_033153_030--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_033153_030--Hb_007426_100 Hb_002894_020 Hb_002894_020 Hb_033153_030--Hb_002894_020 Hb_000445_480--Hb_002894_020 Hb_000445_480--Hb_001529_010 Hb_000445_480--Hb_002874_100 Hb_000445_480--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_000445_480--Hb_000363_100 Hb_003058_090 Hb_003058_090 Hb_007477_020--Hb_003058_090 Hb_007477_020--Hb_000480_050 Hb_007477_020--Hb_033153_030 Hb_007477_020--Hb_002874_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.74814 0.401568 17.9489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.14344 0.247552

CAGE analysis