Hb_004031_060

Information

Type -
Description -
Location Contig4031: 58197-59449
Sequence    

Annotation

kegg
ID atr:s00030p00113790
description AMTR_s00030p00113790; hypothetical protein
nr
ID KJB45700.1
description hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TQD9
description Gossypium raimondii chromosome 7, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_007G3219002 PE=4 SV=1
Gene Ontology
ID GO:0000166
description 8-hydroxygeraniol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004031_060 0.0 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
2 Hb_016120_030 0.0648236549 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
3 Hb_004926_010 0.0838483422 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
4 Hb_002999_010 0.1073059021 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
5 Hb_019053_050 0.1081978863 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000480_050 0.1089866767 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
7 Hb_001091_040 0.1120701619 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
8 Hb_005245_030 0.1170493393 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
9 Hb_140024_010 0.1263815086 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
10 Hb_000959_200 0.1301071341 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
11 Hb_159012_010 0.1304557343 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
12 Hb_007477_020 0.1325317666 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
13 Hb_005373_030 0.1349521583 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000194_030 0.1360941876 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
15 Hb_003058_090 0.1387940573 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
16 Hb_003494_100 0.1443085089 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
17 Hb_002215_020 0.1449082893 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
18 Hb_001091_010 0.1456835654 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
19 Hb_000139_460 0.1495171036 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_039946_040 0.1501218636 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_004031_060 Hb_004031_060 Hb_016120_030 Hb_016120_030 Hb_004031_060--Hb_016120_030 Hb_004926_010 Hb_004926_010 Hb_004031_060--Hb_004926_010 Hb_002999_010 Hb_002999_010 Hb_004031_060--Hb_002999_010 Hb_019053_050 Hb_019053_050 Hb_004031_060--Hb_019053_050 Hb_000480_050 Hb_000480_050 Hb_004031_060--Hb_000480_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040 Hb_016120_030--Hb_002999_010 Hb_140024_010 Hb_140024_010 Hb_016120_030--Hb_140024_010 Hb_016120_030--Hb_019053_050 Hb_005245_030 Hb_005245_030 Hb_016120_030--Hb_005245_030 Hb_016120_030--Hb_004926_010 Hb_000194_030 Hb_000194_030 Hb_004926_010--Hb_000194_030 Hb_159012_010 Hb_159012_010 Hb_004926_010--Hb_159012_010 Hb_004926_010--Hb_000480_050 Hb_004926_010--Hb_002999_010 Hb_007426_100 Hb_007426_100 Hb_004926_010--Hb_007426_100 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_002999_010--Hb_000480_050 Hb_007477_020 Hb_007477_020 Hb_002999_010--Hb_007477_020 Hb_001335_040 Hb_001335_040 Hb_019053_050--Hb_001335_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030 Hb_000480_050--Hb_159012_010 Hb_000480_050--Hb_007477_020 Hb_000480_050--Hb_000194_030 Hb_006351_040 Hb_006351_040 Hb_001091_040--Hb_006351_040 Hb_000139_460 Hb_000139_460 Hb_001091_040--Hb_000139_460 Hb_039946_040 Hb_039946_040 Hb_001091_040--Hb_039946_040 Hb_001091_040--Hb_004926_010 Hb_002020_010 Hb_002020_010 Hb_001091_040--Hb_002020_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161782 52.2079 51.5391 2000.31 0 5.38466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 202.709 51.0789

CAGE analysis